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Updated: Nov 27, 2025

Diagnosing Pulmonary Tuberculosis with the Xpert MTB/RIF Test
Published on: April 9, 2012
Stool-based Xpert MTB/RIF Ultra assay as a tool for detecting pulmonary tuberculosis in children with abnormal chest
Xu-Hui Liu1, Lu Xia2, Bin Song3
1Shanghai Public Health Clinical Center, Fudan University, Shanghai 201508, China; Shanghai Zhongshan Hospital, Fudan University, Shanghai, China.
Insights
The Xpert MTB/RIF Ultra assay on stool samples is a viable alternative for diagnosing pediatric pulmonary tuberculosis (PTB) when respiratory samples are challenging to obtain. This stool-based test shows comparable sensitivity to Mycobacterium tuberculosis culture.
Area of Science:
- Infectious Diseases
- Microbiology
- Pediatric Pulmonology
Background:
- Pediatric pulmonary tuberculosis (PTB) diagnosis can be challenging due to difficulties in obtaining respiratory samples.
- The Xpert MTB/RIF Ultra assay offers a rapid diagnostic tool for tuberculosis.
Purpose of the Study:
- To evaluate the diagnostic performance of the stool-based Xpert MTB/RIF Ultra assay compared to other methods for detecting PTB in children.
- To assess the utility of stool samples as an alternative when respiratory tract samples are difficult to collect.
Main Methods:
- A prospective, head-to-head comparative study analyzed 126 children (<15 years) with abnormal chest imaging.
- Tests included Xpert MTB/RIF Ultra on stool (Ultra-Stool) and respiratory tract samples (Ultra-RTS), Xpert MTB/RIF on respiratory samples (Xpert-RTS), acid-fast bacilli smear (AFB-RTS), and Mycobacterium tuberculosis culture (Culture-RTS).
- Results were compared against a composite reference standard.
Main Results:
- Ultra-RTS showed the highest sensitivity (52%) and specificity (100%).
- Ultra-Stool demonstrated 84.1% concordance with Ultra-RTS, with 45.5% sensitivity and 94.7% specificity.
- The sensitivity of Ultra-Stool was comparable to Mtb culture (45.5%) and superior to AFB-RTS (27.3%).
Conclusions:
- Stool sample-based Xpert MTB/RIF Ultra assay is a comparable alternative for PTB diagnosis when respiratory tract samples are difficult to obtain.
- Assay positivity correlated with patient age and chest imaging findings.
Objectives:
To evaluate the diagnostic efficacy of stool-based Xpert MTB/RIF Ultra assay versus other assays for the detection of paediatric pulmonary tuberculosis (PTB).
Methods:
A prospective head-to-head comparative study was conducted from Dec 2017 to May 2019 in Shanghai Public Health Clinical Centre. Samples were collected from children (< 15 years) with abnormal chest imaging (X-ray or CT scan) results for the following tests: Ultra on stool sample (Ultra-Stool), Ultra on respiratory tract sample (Ultra-RTS), Xpert MTB/RIF assay (Xpert) on RTS (Xpert-RTS), acid-fast bacilli smear on RTS (AFB-RTS), and Mycobacterium tuberculosis (Mtb) culture on RTS (Culture-RTS). The results were compared with a composite reference standard.
Results:
A total of 126 cases with paired results were analysed. Against a composite reference standard, Ultra-RTS demonstrated the highest sensitivity (52%) and specificity (100%). Ultra-Stool showed 84.1% concordance with Ultra-RTS, demonstrating 45.5% sensitivity and 94.7% specificity (kappa = 0.65, 95% CI= 0.51-0.79). The sensitivity of Ultra-Stool was similar to Mtb culture (45.5%, p = 1.000) and higher than AFB-RTS (27.3%, p < 0.05). Assay positivity was associated with age and infiltration range in chest imaging.
Conclusions:
When RTS is difficult to obtain, stool sample-based Ultra is a comparable alternative.
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