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Updated: Nov 26, 2025

Single-cell RNA-Seq of Defined Subsets of Retinal Ganglion Cells
Published on: May 22, 2017
Diversification of molecularly defined myenteric neuron classes revealed by single-cell RNA sequencing
Khomgrit Morarach1, Anastassia Mikhailova1, Viktoria Knoflach1
1Division of Molecular Neurobiology, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden.
Researchers have identified 12 distinct enteric neuron classes in the mouse small intestine using single-cell RNA sequencing. This study reveals a new model for how these enteric nervous system (ENS) neurons develop.
Area of Science:
- Neuroscience
- Developmental Biology
- Genomics
Background:
- The enteric nervous system (ENS) autonomously regulates intestinal functions through diverse neuron types.
- Understanding the full spectrum of enteric neuron diversity and their developmental origins is crucial but remains incomplete.
Purpose of the Study:
- To establish a comprehensive molecular taxonomy of enteric neuron classes in the mouse small intestine.
- To elucidate the developmental principles governing enteric neuron diversification.
Main Methods:
- Single-cell RNA sequencing of neurons from the mouse small intestine's myenteric plexus.
- Transcriptome analysis of the embryonic ENS.
- Identification of cell-cell communication features and histochemical markers.
Main Results:
- Defined a molecular taxonomy of 12 distinct enteric neuron classes.
- Uncovered a novel developmental principle: initial binary neurogenic branching followed by postmitotic differentiation for other neuron types.
- Identified key transcriptional regulators, including Pbx3, involved in neuronal fate transitions.
Conclusions:
- Provides a foundational molecular and conceptual resource for studying ENS circuits.
- Enables prediction of regulators for directed differentiation of specific enteric neuron classes.
- Advances understanding of neuronal diversification in the developing nervous system.
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