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Updated: Nov 26, 2025

Detection of Horizontal Gene Transfer Mediated by Natural Conjugative Plasmids in E. coli
Published on: March 24, 2023
Emergence of plasmid-mediated mcr genes from Gram-negative bacteria at the human-animal interface
Humera Javed1,2, Sidrah Saleem1, Aizza Zafar2
1Department of Microbiology, University of Health Sciences, Lahore, Pakistan.
Background:
The global emergence of plasmid-mediated colistin resistance (Col-R) conferred by mcr genes in gram-negative rods (GNRs) has jeopardized the last treatment option for multidrug-resistant bacterial infections in humans. This study aimed to assess the emergence of mcr gene-mediated Col-R in GNRs isolated from humans and animals in Pakistan.
Methods:
Animal and clinical specimens collected from various sources were prospectively analysed using standard microbiological procedures. Pathogens were identified using the API 20E and API 20NE systems (bioMerieux). Minimum inhibitory concentration (MIC) against colistin was determined using the MIC detection methods, and multiplex polymerase chain reaction (PCR) was used to amplify the mcr-1 to mcr-5 genes.
Results:
We isolated 126 (88.1%) animal and 17 (11.9%) human Col-R phenotypes, among which there was a significant association (P < 0.01) of Escherichia coli and Proteus mirabilis with animals and of Acinetobacter baumannii with humans. Animal strains exhibited statistically significant (P < 0.05) resistance to co-trimoxazole, chloramphenicol, and moxifloxacin, and the human pathogens exhibited statistically significant (P < 0.05) antibiotic resistance to cephalosporins, carbapenems, and piperacillin-tazobactam. For Col-R strains, MIC50 values were > 6 µg/mL and > 12 µg/mL for human and animal isolates, respectively. mcr genes were detected in 110 (76.9%) bacterial strains, of which 108 (98.2%) were mcr-1 and 2 (1.8%) were mcr-2.
Conclusions:
The detection of a considerable number of mcr-1 and mcr-2 genes in animals is worrisome, as they are now being detected in clinical pathogens. The acquisition of mcr genes by colistin-susceptible bacteria could leave us in a post-antibiotic era.
Insights
Plasmid-mediated colistin resistance (Col-R) due to mcr genes is emerging in gram-negative rods from humans and animals in Pakistan. The high prevalence of mcr-1 and mcr-2 genes in animal isolates is concerning for public health.
Area of Science:
- Microbiology
- Antimicrobial Resistance
- One Health
Background:
- Plasmid-mediated colistin resistance (Col-R) from mcr genes in gram-negative rods (GNRs) threatens last-resort antibiotics.
- The emergence of Col-R in GNRs poses a significant global health risk.
Purpose of the Study:
- To investigate the prevalence and characteristics of mcr gene-mediated Col-R in GNRs from human and animal sources in Pakistan.
- To assess the association of specific GNRs with human versus animal origins and their resistance profiles.
Main Methods:
- Standard microbiological techniques for isolation and identification of GNRs.
- MIC determination for colistin susceptibility and multiplex PCR for mcr-1 to mcr-5 gene detection.
- API 20E and API 20NE systems were utilized for pathogen identification.
Main Results:
- Col-R phenotypes were identified in 126 animal (88.1%) and 17 human (11.9%) isolates.
- Escherichia coli and Proteus mirabilis were significantly associated with animal isolates, while Acinetobacter baumannii was linked to human isolates.
- mcr genes (mcr-1 and mcr-2) were detected in 76.9% of Col-R strains, predominantly mcr-1 (98.2%).
Conclusions:
- The substantial detection of mcr-1 and mcr-2 genes in animal isolates is a significant public health concern.
- The presence of mcr genes in clinical pathogens highlights the potential for widespread resistance.
- The spread of mcr genes could accelerate the arrival of a post-antibiotic era.
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