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Transcription Attenuation in Prokaryotes02:42

Transcription Attenuation in Prokaryotes

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Transcriptional attenuation occurs when RNA transcription is prematurely terminated due to the formation of a terminator mRNA hairpin structure.  Bacteria use these hairpins to regulate the transcription process and control the synthesis of several amino acids including histidine, lysine, threonine, and phenylalanine. Transcription attenuation takes place in the non-coding regions of mRNA.
There are several different mechanisms used to attenuate transcription. In ribosome mediated...
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Bacterial Transcription01:53

Bacterial Transcription

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RNA polymerase (RNAP) carries out DNA-dependent RNA synthesis in both bacteria and eukaryotes. Bacteria do not have a membrane-bound nucleus. So, transcription and translation occur simultaneously, on the same DNA template.
Transcription can be divided into three main stages, each involving distinct DNA sequences to guide the polymerase. These are:
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Chromatin Structure Regulates pre-mRNA Processing02:41

Chromatin Structure Regulates pre-mRNA Processing

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In eukaryotic cells, nascent mRNA transcripts need to undergo many post-transcriptional modifications to reach the cell cytoplasm and translate into functional proteins. For a long time, transcription and pre-mRNA processing were considered two independent events that occur sequentially in the cell. However, it has now been well established that transcription and pre-mRNA processing are two simultaneous processes that are precisely regulated inside the cell.
The chromatin structure, especially...
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Transcription in Prokaryotes01:28

Transcription in Prokaryotes

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Transcription is a highly regulated process that converts genetic information into RNA molecules. The transcription cycle is divided into three key stages: initiation, elongation, and termination, each driven by specific molecular mechanisms.Initiation of TranscriptionIn bacteria, transcription begins when the RNA polymerase core enzyme associates with a sigma factor to form a holoenzyme. For example, the E. coli sigma factor called σ70 forms a holoenzyme, which recognizes the -10 (Pribnow...
1.2K
Transcription Initiation01:47

Transcription Initiation

18.6K
Initiation is the first step of transcription in eukaryotes. Prokaryotic RNA Polymerase (RNAP) can bind to the template DNA and start transcribing. On the other hand, transcription in eukaryotes requires additional proteins, called transcription factors, to first bind to the promoter region in the DNA template. This binding helps recruit the specific RNAP that can assemble on the DNA and start transcription.
The promoters and enhancers and their accessory proteins allow tight regulation of...
18.6K
General Transcription Factors01:30

General Transcription Factors

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Tissue-specific transcription factors contribute to diverse cellular functions in mammals. For example, the gene for beta globin, a major component of hemoglobin, is present in all cells of the body. However, it is only expressed in red blood cells because the transcription factors that can bind to the promoter sequences of the beta globin gene are only expressed in these cells. Tissue-specific transcription factors also ensure that mutations in these factors may impair only the function of...
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Related Experiment Video

Updated: Nov 26, 2025

Analysis of Termination of Transcription Using BrUTP-strand-specific Transcription Run-on TRO Approach
12:12

Analysis of Termination of Transcription Using BrUTP-strand-specific Transcription Run-on TRO Approach

Published on: March 12, 2017

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Pre-termination Transcription Complex: Structure and Function.

Zhitai Hao1, Vitaly Epshtein1, Kelly H Kim2

  • 1Department of Biochemistry and Molecular Pharmacology, New York University School of Medicine, New York, NY 10016, USA.

Molecular Cell
|December 9, 2020
PubMed
Summary
This summary is machine-generated.

Rho, a bacterial transcription termination factor, forms a pre-termination complex with RNA polymerase and elongation factors. This complex is crucial for Rho-dependent termination, ensuring gene regulation and genomic stability.

Keywords:
RNA polymerase, transcription termination, Rho, NusA, NusG, elongation complex, Cryo-EM

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Tandem Affinity Purification of Protein Complexes from Eukaryotic Cells
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Tandem Affinity Purification of Protein Complexes from Eukaryotic Cells

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Last Updated: Nov 26, 2025

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Tandem Affinity Purification of Protein Complexes from Eukaryotic Cells
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Tandem Affinity Purification of Protein Complexes from Eukaryotic Cells

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Area of Science:

  • Bacterial transcription
  • Molecular mechanisms of gene regulation
  • Protein-nucleic acid interactions

Background:

  • Rho is a key transcription termination factor in bacteria, essential for RNA polymerase recycling, gene regulation, and genomic stability.
  • Existing models suggest Rho binds RNA before interacting with RNA polymerase (RNAP).

Purpose of the Study:

  • To elucidate the structural basis of Rho-dependent transcription termination.
  • To investigate the intermediate complexes formed during termination.

Main Methods:

  • Cryo-electron microscopy (cryo-EM) was used to determine the structures of termination intermediates.
  • Biochemical assays were performed to map key interactions within the pre-termination complex.

Main Results:

  • The study reveals a novel "pre-termination complex" (PTC) involving Rho, RNAP, NusA, and NusG.
  • RNA interacts with NusA before entering the Rho ring, challenging previous models.
  • Key interactions within the PTC were identified and shown to be critical for termination.

Conclusions:

  • The formation of a stable PTC is a prerequisite for Rho-dependent transcription termination.
  • This finding refines our understanding of the molecular mechanism of transcription termination in bacteria.