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Updated: Nov 26, 2025

Plant Promoter Analysis: Identification and Characterization of Root Nodule Specific Promoter in the Common Bean
Published on: December 23, 2017
An SHR-SCR module specifies legume cortical cell fate to enable nodulation
Wentao Dong1,2, Yayun Zhu1,3, Huizhong Chang1,3
1National Key Laboratory of Plant Molecular Genetics, CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, SIBS, Chinese Academy of Sciences, Shanghai, China.
Legumes uniquely form symbiotic relationships with nitrogen-fixing rhizobia. A conserved SHORTROOT-SCARECROW (SHR-SCR) gene network in legume root cells drives symbiotic nodule development.
Area of Science:
- Plant Biology
- Molecular Genetics
- Evolutionary Biology
Background:
- Legumes uniquely establish symbiotic relationships with nitrogen-fixing rhizobia.
- The cellular basis for this symbiosis, particularly in root cortical cells, remains incompletely understood.
- Previous theories suggested unique properties of legume root cortical cells facilitated rhizobial symbiosis.
Purpose of the Study:
- To investigate the molecular mechanisms underlying the unique cell fate and developmental program in legume root cortical cells.
- To determine the role of the SHORTROOT-SCARECROW (SHR-SCR) gene network in initiating rhizobial symbiosis and nodule organogenesis.
- To explore the evolutionary significance of the SHR-SCR module in the development of legume-rhizobia endosymbiosis.
Main Methods:
- Analysis of gene expression patterns, specifically SCR and SHR, in Medicago truncatula root cortical cells.
- Investigating the localization and function of SHR protein in M. truncatula compared to non-legume Arabidopsis thaliana.
- Studying the conservation of the cortical SHR-SCR network across legume species and its response to rhizobial signals.
- Experimentally inducing ectopic expression of SHR and SCR to assess their effect on root cortical cell division.
Main Results:
- A conserved SHORTROOT-SCARECROW (SHR-SCR) stem cell program in Medicago truncatula cortical cells specifies their distinct fate.
- The SHR-SCR network is expressed in legume cortical cells, with SHR protein accumulating from the stele, a mechanism absent in Arabidopsis.
- This network is conserved across legumes, responds to rhizobial signals, and triggers legume-specific cortical cell division for nodule formation.
- Ectopic activation of SHR and SCR in legumes successfully induced root cortical cell division.
Conclusions:
- The acquisition of the cortical SHR-SCR module enabled coupled cell division and rhizobial infection in legumes.
- This molecular innovation is proposed as a central event in the evolution of rhizobial endosymbiosis in legumes.
- The study elucidates a key genetic mechanism driving legume-specific symbiotic development.
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