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Related Experiment Video

Updated: Nov 26, 2025

A Telemetric, Gravimetric Platform for Real-Time Physiological Phenotyping of Plant&#8211;Environment Interactions
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Applying FAIR Principles to Plant Phenotypic Data Management in GnpIS.

C Pommier1, C Michotey1, G Cornut1

  • 1URGI, INRA, Université Paris-Saclay, 78026 Versailles, France.

Plant Phenomics (Washington, D.C.)
|December 14, 2020
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Summary

GnpIS is a plant phenomics data repository enabling FAIR data access. It integrates diverse experimental data using standards, promoting interoperability and citability for plant science research.

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Area of Science:

  • Plant science
  • Bioinformatics
  • Data management

Background:

  • Plant phenomics research generates vast datasets.
  • Effective data management is crucial for scientific advancement.
  • Existing repositories may lack flexibility or interoperability.

Purpose of the Study:

  • Introduce GnpIS, a plant phenomics data repository.
  • Highlight its adherence to FAIR data principles.
  • Demonstrate its capacity for integrating diverse plant experimental data.

Main Methods:

  • Developed a generic, ontology-driven data model.
  • Implemented an innovative software architecture for data integration, storage, and querying.
  • Leveraged international standards (Crop Ontology, MIAPPE, Breeding API).

Main Results:

  • GnpIS provides long-term, FAIR access to plant phenomics data.
  • The repository handles diverse species and experiment types, including environmental measures.
  • Ensures data integration and interoperability with genotyping data.

Conclusions:

  • GnpIS facilitates data sharing and reuse in plant science.
  • Its compliance with standards enables interoperability with other repositories.
  • Contributes to international federations of information systems for enhanced research.