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Updated: Nov 25, 2025

Author Spotlight: Advancements in Multiplex Detection of Respiratory Viruses
Published on: November 10, 2023
IGI-LuNER: single-well multiplexed RT-qPCR test for SARS-CoV-2
Elizabeth C Stahl1,2, Connor A Tsuchida1,2, Jennifer R Hamilton1,2
1University of California, Berkeley, Berkeley, CA, USA.
A new multiplexed RT-qPCR assay detects SARS-CoV-2 (COVID-19) N and E genes and a sample control in one reaction. This cost-effective method improves diagnostic speed and accuracy, reducing false negatives.
Area of Science:
- Molecular Biology
- Virology
- Diagnostic Assays
Background:
- Current SARS-CoV-2 RT-qPCR diagnostics often require multiple reactions, increasing time and cost.
- Reliance on single viral targets in some tests elevates the risk of false-negative results.
- A single-tube assay combining multiple SARS-CoV-2 targets and a sample control is lacking.
Approach:
- Developed the IGI-LuNER RT-qPCR assay for simultaneous detection of SARS-CoV-2 N gene, E gene, and human RNase P (NER).
- Utilized the Luna Probe Universal One-Step RT-qPCR master mix with established primers and probes.
- Optimized for performance in 384-well plates.
Key Points:
- The IGI-LuNER assay integrates detection of two key SARS-CoV-2 genes (N and E) and a human sample control (RNase P) into a single reaction.
- This multiplexed approach is cost-effective and maintains high detection sensitivity suitable for clinical reporting.
- The assay is compatible with high-throughput platforms like 384-well plates.
Conclusions:
- The IGI-LuNER assay offers a streamlined, efficient, and accurate method for SARS-CoV-2 detection.
- This single-reaction assay reduces diagnostic time, cost, and the likelihood of false negatives.
- It facilitates future sample pooling strategies, significantly enhancing SARS-CoV-2 testing throughput.
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