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Updated: Nov 25, 2025

Visualizing and Quantifying Endonuclease-Based Site-Specific DNA Damage
Published on: August 21, 2021
DNA Repair Biosensor-Identified DNA Damage Activities of Endophyte Extracts from Garcinia cowa
Tassanee Lerksuthirat1, Rakkreat Wikiniyadhanee2, Sermsiri Chitphuk1
1Research Center, Faculty of Medicine Ramathibodi Hospital, Mahidol University, Bangkok 10400, Thailand.
Abstract:
Recent developments in chemotherapy focus on target-specific mechanisms, which occur only in cancer cells and minimize the effects on normal cells. DNA damage and repair pathways are a promising target in the treatment of cancer. In order to identify novel compounds targeting DNA repair pathways, two key proteins, 53BP1 and RAD54L, were tagged with fluorescent proteins as indicators for two major double strand break (DSB) repair pathways: non-homologous end-joining (NHEJ) and homologous recombination (HR). The engineered biosensor cells exhibited the same DNA repair properties as the wild type. The biosensor cells were further used to investigate the DNA repair activities of natural biological compounds. An extract from Phyllosticta sp., the endophyte isolated from the medicinal plant Garcinia cowa Roxb. ex Choisy, was tested. The results showed that the crude extract induced DSB, as demonstrated by the increase in the DNA DSB marker γH2AX. The damaged DNA appeared to be repaired through NHEJ, as the 53BP1 focus formation in the treated fraction was higher than in the control group. In conclusion, DNA repair-based biosensors are useful for the preliminary screening of crude extracts and biological compounds for the identification of potential targeted therapeutic drugs.
Insights
Researchers developed DNA repair biosensors to screen natural compounds. An extract from Phyllosticta sp. induced DNA damage and appeared to activate the non-homologous end-joining repair pathway.
Area of Science:
- Oncology
- Molecular Biology
- Biochemistry
Background:
- Chemotherapy increasingly targets cancer-specific mechanisms to minimize side effects.
- DNA damage and repair pathways are critical targets for novel cancer therapeutics.
- Targeting DNA repair offers a promising strategy for developing more effective and selective cancer treatments.
Purpose of the Study:
- To develop and validate DNA repair biosensor cells for screening natural compounds.
- To investigate the DNA repair activities induced by a natural compound extract.
- To identify potential therapeutic agents targeting DNA repair pathways in cancer.
Main Methods:
- Engineered cells with fluorescently tagged 53BP1 and RAD54L proteins to monitor DNA double-strand break (DSB) repair pathways (NHEJ and HR).
- Validated biosensor cell lines against wild-type cells for accurate DNA repair assessment.
- Tested a crude extract from Phyllosticta sp. (endophyte of Garcinia cowa) for its effect on DNA damage and repair.
Main Results:
- The engineered biosensor cells accurately reflected wild-type DNA repair properties.
- The Phyllosticta sp. extract induced DNA double-strand breaks (DSBs), evidenced by increased γH2AX.
- Evidence suggests the extract promotes DNA repair via the non-homologous end-joining (NHEJ) pathway, indicated by elevated 53BP1 focus formation.
Conclusions:
- DNA repair-based biosensors are effective tools for preliminary screening of natural compounds.
- The study identified a Phyllosticta sp. extract as a potential agent inducing DNA damage and activating NHEJ repair.
- This approach facilitates the discovery of novel therapeutic compounds for cancer treatment targeting DNA repair mechanisms.
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