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Updated: Nov 24, 2025

A Fast and Quantitative Method for Post-translational Modification and Variant Enabled Mapping of Peptides to Genomes
Published on: May 22, 2018
CorGAT: a tool for the functional annotation of SARS-CoV-2 genomes
Matteo Chiara1,2, Federico Zambelli1,2, Marco Antonio Tangaro2
1Department of Biosciences, University of Milan, 20133 Milan, Italy.
Summary:
While over 200 000 genomic sequences are currently available through dedicated repositories, ad hoc methods for the functional annotation of SARS-CoV-2 genomes do not harness all currently available resources for the annotation of functionally relevant genomic sites. Here, we present CorGAT, a novel tool for the functional annotation of SARS-CoV-2 genomic variants. By comparisons with other state of the art methods we demonstrate that, by providing a more comprehensive and rich annotation, our method can facilitate the identification of evolutionary patterns in the genome of SARS-CoV-2.
Availabilityand Implementation:
Galaxy.
Abstract:
http://corgat.cloud.ba.infn.it/galaxy; software: https://github.com/matteo14c/CorGAT/tree/Revision_V1; docker: https://hub.docker.com/r/laniakeacloud/galaxy_corgat.
Supplementary Information:
Supplementary data are available at Bioinformatics online.
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