Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

One-Compartment Open Model: Wagner-Nelson and Loo Riegelman Method for ka Estimation01:24

One-Compartment Open Model: Wagner-Nelson and Loo Riegelman Method for ka Estimation

927
This lesson introduces two critical methods in pharmacokinetics, the Wagner-Nelson and Loo-Riegelman methods, used for estimating the absorption rate constant (ka) for drugs administered via non-intravenous routes. The Wagner-Nelson method relates ka to the plasma concentration derived from the slope of a semilog percent unabsorbed time plot. However, it is limited to drugs with one-compartment kinetics and can be impacted by factors like gastrointestinal motility or enzymatic degradation.
On...
927
Hybridization of Atomic Orbitals II03:35

Hybridization of Atomic Orbitals II

43.4K
sp3d and sp3d 2 Hybridization
43.4K
Hybridization of Atomic Orbitals I03:24

Hybridization of Atomic Orbitals I

59.9K
The mathematical expression known as the wave function, ψ, contains information about each orbital and the wavelike properties of electrons in an isolated atom. When atoms are bound together in a molecule, the wave functions combine to produce new mathematical descriptions that have different shapes. This process of combining the wave functions for atomic orbitals is called hybridization and is mathematically accomplished by the linear combination of atomic orbitals. The new orbitals that...
59.9K
Aldehydes and Ketones to Alkanes: Wolff–Kishner Reduction01:09

Aldehydes and Ketones to Alkanes: Wolff–Kishner Reduction

5.2K
Wolff–Kishner reduction involves converting aldehydes and ketones to alkanes using hydrazine and a base. The reaction converts a carbonyl group to a methylene group. The method was independently discovered by N. Kishner in 1911 and L. Wolff in 1912. The reduction is carried out in high-boiling solvents such as ethylene glycol and diethylene glycol because heat is required to deprotonate the N–H proton in one of the reaction steps.                                       ...
5.2K
Chemical Shift: Internal References and Solvent Effects01:17

Chemical Shift: Internal References and Solvent Effects

1.1K
In an NMR sample, precise measurement of the absolute absorption frequencies of nuclei is difficult. A standard internal reference compound is added, and the frequency difference between the reference signal and sample signals is measured.
The internal reference compound generally used in NMR spectroscopy is tetramethylsilane (TMS). TMS is preferred because it is chemically inert, soluble in NMR solvents, and easily removable. Also, the highly shielded methyl protons in TMS yield an intense...
1.1K
Gaussian Elimination: Problem Solving01:30

Gaussian Elimination: Problem Solving

65
Systems of linear equations in several variables are pivotal in modeling complex scenarios involving multiple unknowns and constraints. Such systems are widely used in various fields to represent relationships where several conditions must be simultaneously satisfied. Each variable in the system corresponds to an unknown quantity, while each equation imposes a linear constraint, leading to a structured approach for analyzing and solving real-world problems.A system of three equations with three...
65

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Ground and excited-state properties of the extended Hubbard dimer from the multichannel Dyson equation.

The Journal of chemical physics·2025
Same author

The Iso-Inverse: A Contravariant Sparse Approximate Inverse Matrix.

The journal of physical chemistry. A·2024
Same author

The Emergence of the Hexagonal Lattice in Two-Dimensional Wigner Fragments.

The journal of physical chemistry letters·2024
Same author

Solution to the Thomson Problem for Clifford Tori with an Application to Wigner Crystals.

Journal of chemical theory and computation·2023
Same author

Mapping of Hückel zigzag carbon nanotubes onto independent polyene chains: Application to periodic nanotubes.

The Journal of chemical physics·2023
Same author

The Wigner localization of interacting electrons in a one-dimensional harmonic potential.

The Journal of chemical physics·2022
Same journal

How Do DICER1 Syndrome Mutations Disrupt Catalysis? Unveiling Dicer Metal Binding Architecture and Mechanism of Action Using MD Simulations and QM/MM Calculations.

Journal of computational chemistry·2026
Same journal

Quadruple Bonding of Alkaline Earth Atoms in AeCLi<sub>4</sub> (Ae = Be - Ba) Complexes.

Journal of computational chemistry·2026
Same journal

From SMILES Codes for Reactants and Products to Transition States With VeloxChem.

Journal of computational chemistry·2026
Same journal

Electric-Field Effects on Structure and Conductance in a Cytochrome b<sub>562</sub> Junction.

Journal of computational chemistry·2026
Same journal

Quantum Chemistry Study of Luminescence Quenching in the Eu<sup>3+</sup>@UiO-67 Sensor Induced by Ag<sup>+</sup> Ions.

Journal of computational chemistry·2026
Same journal

Projection-Modified Direct Inversion in the Iterative Subspace: A Memory-Efficient Convergence Method for the Extended Molecular Ornstein-Zernike Theory.

Journal of computational chemistry·2026
See all related articles

Related Experiment Video

Updated: Nov 24, 2025

Computation of Atmospheric Concentrations of Molecular Clusters from ab initio Thermochemistry
12:11

Computation of Atmospheric Concentrations of Molecular Clusters from ab initio Thermochemistry

Published on: April 8, 2020

8.5K

A diagonalization-free optimization algorithm for solving Kohn-Sham equations of closed-shell molecules.

Martin Mrovec1,2, J A Berger3

  • 1Department of Applied Mathematics, VŠB - Technical University of Ostrava, Ostrava, Czech Republic.

Journal of Computational Chemistry
|December 21, 2020
PubMed
Summary
This summary is machine-generated.

A new local optimization algorithm efficiently solves Kohn-Sham equations without eigendecomposition. It demonstrates high reliability, especially when standard self-consistent field (SCF) methods fail, converging to accurate electronic structure solutions.

Keywords:
Grassmann manifoldKohn-Sham equationsconstrained optimizationlocal minimizertangent set projection

More Related Videos

Excitonic Hamiltonians for Calculating Optical Absorption Spectra and Optoelectronic Properties of Molecular Aggregates and Solids
08:04

Excitonic Hamiltonians for Calculating Optical Absorption Spectra and Optoelectronic Properties of Molecular Aggregates and Solids

Published on: May 27, 2020

8.8K
Spatial Separation of Molecular Conformers and Clusters
10:37

Spatial Separation of Molecular Conformers and Clusters

Published on: January 9, 2014

11.3K

Related Experiment Videos

Last Updated: Nov 24, 2025

Computation of Atmospheric Concentrations of Molecular Clusters from ab initio Thermochemistry
12:11

Computation of Atmospheric Concentrations of Molecular Clusters from ab initio Thermochemistry

Published on: April 8, 2020

8.5K
Excitonic Hamiltonians for Calculating Optical Absorption Spectra and Optoelectronic Properties of Molecular Aggregates and Solids
08:04

Excitonic Hamiltonians for Calculating Optical Absorption Spectra and Optoelectronic Properties of Molecular Aggregates and Solids

Published on: May 27, 2020

8.8K
Spatial Separation of Molecular Conformers and Clusters
10:37

Spatial Separation of Molecular Conformers and Clusters

Published on: January 9, 2014

11.3K

Area of Science:

  • Computational Chemistry
  • Quantum Chemistry
  • Materials Science

Background:

  • Kohn-Sham equations are central to density functional theory.
  • Standard self-consistent field (SCF) methods can face convergence issues.
  • Eigendecomposition is computationally intensive for large systems.

Purpose of the Study:

  • Introduce a novel local optimization algorithm for Kohn-Sham equations.
  • Improve computational efficiency and reliability in electronic structure calculations.
  • Provide an alternative to traditional SCF methods, especially in challenging cases.

Main Methods:

  • Direct minimization of the energy functional with Grassmann Manifold constraints.
  • Avoidance of eigendecomposition.
  • Optimization for one Kohn-Sham matrix evaluation per iteration.

Main Results:

  • Algorithm shows high reliability where SCF iterations fail.
  • Achieves competitive performance with DIIS-accelerated SCF.
  • Randomization of initial approximation leads to global minimum convergence in most cases.

Conclusions:

  • The presented local optimization algorithm offers a robust and efficient alternative for solving Kohn-Sham equations.
  • It is particularly advantageous for large-scale computations and problematic convergence scenarios.
  • Further development could enhance its guarantee of global minimum convergence.