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Updated: Nov 24, 2025

Novel Sequence Discovery by Subtractive Genomics
Published on: January 25, 2019
The complete chloroplast genome sequence of Phoebe puwenensis
Jinfeng Zhang1, Yunqing Li1, Yi Wang1
1Laboratory of Forest Plant Cultivation and Utilization, Yunnan Academy of Forestry, Kunming Yunnan, People's Republic of China.
Abstract:
The first complete chloroplast genome (cpDNA) sequence of Phoebe puwenensis was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 152,746 bp in length, contains a large single-copy region (LSC) of 93,685 bp and a small single-copy region (SSC) of 18,909 bp, which were separated by a pair of inverted repeats (IR) regions of 20,076 bp. The genome contains 127 genes, including 82 protein-coding genes, 8 ribosomal RNA genes, and 36 transfer RNA genes. The overall GC content of the whole genome is 39.1%, and the corresponding values of the LSC, SSC, and IR regions are 37.9%, 33.9%, and 44.4%, respectively. Further phylogenomic analysis showed that P. puwenensis and Phoebe neurantha clustered in a clade in Phoebe genus.
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