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Updated: Nov 24, 2025

Novel Sequence Discovery by Subtractive Genomics
Published on: January 25, 2019
The complete chloroplast genome sequence of Aglaia odorata
Jinfeng Zhang1, Yunqing Li1, Yi Wang1
1Laboratory of Forest Plant Cultivation and Utilization, Yunnan Academy of Forestry, Kunming Yunnan, People's Republic of China.
Abstract:
The first complete chloroplast genome (cpDNA) sequence of Aglaia odorata was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 160,978 bp in length, contains a large single-copy region (LSC) of 88,146 bp and a small single-copy region (SSC) of 18,646 bp, which were separated by a pair of inverted repeats (IR) regions of 27,089 bp. The genome contains 129 genes, including 84 protein-coding genes, 8 ribosomal RNA genes, and 37 transfer RNA genes. The overall GC content of the whole genome is 37.5%%, and the corresponding values of the LSC, SSC, and IR regions are 35.5%, 31.8%, and 42.7%, respectively. Further phylogenomic analysis showed that A. odorata, Cipadessa cinerascens and Aphanamixis polystachya clustered in a clade in family Meliaceae.
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