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Distinct Modulation of Wild-Type and Selective Gene Mutated Vitamin D Receptor by Essential Polyunsaturated Fatty
Hari Balaji1, A Selvaraj2, Niladri Saha2
1TIFAC CORE in Herbal Drugs, Department of Pharmacognosy, JSS College of Pharmacy, JSS Academy of Higher Education & Research, Ooty, Nilgiris, Tamil nadu, India.
Abstract:
Vitamin-D deficiency is a global concern. Gene mutations in the vitamin D receptor's (VDR) ligand binding domain (LBD) variously alter the ligand binding affinity, heterodimerization with retinoid X receptor (RXR) and inhibit coactivator interactions. These LBD mutations may result in partial or total hormone unresponsiveness. A plethora of evidence reports that selective long chain polyunsaturated fatty acids (PUFAs), including eicosapentaenoic acid (EPA), docosahexaenoic acid (DHA) and arachidonic acid (AA) bind to the ligand-binding domain of VDR and lead to transcriptional activation. We, therefore, hypothesize that selective PUFAs would modulate the dynamics and kinetics of VDRs, irrespective of the deficiency of vitamin-D. The spatial arrangements of the selected PUFAs in VDR active site were examined by in-silico docking studies. The docking results revealed that PUFAs have fatty acid structure-specific binding affinity towards VDR. The calculated EPA, DHA & AA binding energies (Cdocker energy) were lesser compared to vitamin-D in wild type of VDR (PDB id: 2ZLC). Of note, the DHA has higher binding interactions to the mutated VDR (PDB id: 3VT7) when compared to the standard Vitamin-D. Molecular dynamic simulation was utilized to confirm the stability of potential compound binding of DHA with mutated VDR complex. These findings suggest the unique roles of PUFAs in VDR activation and may offer alternate strategy to circumvent vitamin-D deficiency.
Insights
Polyunsaturated fatty acids (PUFAs) like DHA show strong binding to the vitamin D receptor (VDR), even with VDR mutations. This suggests PUFAs may offer an alternative strategy for VDR activation, independent of vitamin D levels.
Area of Science:
- Biochemistry
- Molecular Biology
- Genetics
Background:
- Vitamin D deficiency is a widespread health issue.
- Mutations in the vitamin D receptor's (VDR) ligand-binding domain (LBD) can impair VDR function and lead to hormone unresponsiveness.
- Long-chain polyunsaturated fatty acids (PUFAs) are known to interact with the VDR LBD.
Purpose of the Study:
- To investigate whether PUFAs can modulate VDR dynamics and kinetics, independent of vitamin D.
- To examine the binding affinity of specific PUFAs (EPA, DHA, AA) to both wild-type and mutated VDR.
Main Methods:
- In-silico molecular docking studies to analyze the spatial arrangement and binding affinity of PUFAs in the VDR active site.
- Molecular dynamic simulations to confirm the stability of PUFA-VDR complexes, particularly DHA with mutated VDR.
Main Results:
- Docking studies revealed structure-specific binding affinities of PUFAs to VDR.
- EPA, DHA, and AA exhibited lower binding energies compared to vitamin D in wild-type VDR.
- Docosahexaenoic acid (DHA) demonstrated enhanced binding interactions with mutated VDR compared to vitamin D.
Conclusions:
- PUFAs possess unique properties for VDR activation.
- DHA shows particular promise for interacting with mutated VDR, suggesting a potential therapeutic avenue.
- These findings propose PUFAs as an alternative strategy to address vitamin D deficiency and VDR dysfunction.
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