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Updated: Nov 22, 2025

Simple and Fast Rolling Circle Amplification-Based Detection of Topoisomerase 1 Activity in Crude Biological Samples
Published on: December 2, 2022
Type IA Topoisomerases as Targets for Infectious Disease Treatments
Ahmed Seddek1,2, Thirunavukkarasu Annamalai1, Yuk-Ching Tse-Dinh1,2
1Department of Chemistry and Biochemistry, Florida International University, Miami, FL 33199, USA.
Abstract:
Infectious diseases are one of the main causes of death all over the world, with antimicrobial resistance presenting a great challenge. New antibiotics need to be developed to provide therapeutic treatment options, requiring novel drug targets to be identified and pursued. DNA topoisomerases control the topology of DNA via DNA cleavage-rejoining coupled to DNA strand passage. The change in DNA topological features must be controlled in vital processes including DNA replication, transcription, and DNA repair. Type IIA topoisomerases are well established targets for antibiotics. In this review, type IA topoisomerases in bacteria are discussed as potential targets for new antibiotics. In certain bacterial pathogens, topoisomerase I is the only type IA topoisomerase present, which makes it a valuable antibiotic target. This review will summarize recent attempts that have been made to identify inhibitors of bacterial topoisomerase I as potential leads for antibiotics and use of these inhibitors as molecular probes in cellular studies. Crystal structures of inhibitor-enzyme complexes and more in-depth knowledge of their mechanisms of actions will help to establish the structure-activity relationship of potential drug leads and develop potent and selective therapeutics that can aid in combating the drug resistant bacterial infections that threaten public health.
Insights
New antibiotics are crucial due to antimicrobial resistance. This review explores bacterial topoisomerase I as a novel drug target, highlighting its potential for developing new treatments against resistant infections.
Area of Science:
- Microbiology
- Molecular Biology
- Drug Discovery
Background:
- Antimicrobial resistance is a global health crisis, necessitating novel therapeutic strategies.
- DNA topoisomerases are essential enzymes regulating DNA topology during vital cellular processes.
- Type IIA topoisomerases are validated antibiotic targets, but Type IA topoisomerases, specifically bacterial topoisomerase I, represent a promising alternative.
Purpose of the Study:
- To review recent efforts in identifying inhibitors of bacterial topoisomerase I.
- To discuss the potential of bacterial topoisomerase I as a novel antibiotic target.
- To explore the use of topoisomerase I inhibitors as molecular probes in cellular studies.
Main Methods:
- Literature review of recent research on bacterial topoisomerase I inhibitors.
- Analysis of crystal structures of inhibitor-enzyme complexes.
- Examination of structure-activity relationships for potential drug leads.
Main Results:
- Bacterial topoisomerase I is a viable and valuable target, especially in pathogens where it's the sole Type IA topoisomerase.
- Identification of inhibitors provides leads for new antibiotic development.
- Understanding inhibitor mechanisms aids in designing potent and selective therapeutics.
Conclusions:
- Bacterial topoisomerase I inhibitors show promise for combating drug-resistant bacterial infections.
- Further structural and mechanistic studies will facilitate the development of effective antibiotics.
- Targeting bacterial topoisomerase I offers a new avenue in the fight against infectious diseases.
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