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Robustness of brain tumor segmentation.

Sabine Müller1,2,3,4, Joachim Weickert3, Norbert Graf4

  • 1Fraunhofer ITWM, Competence Center High Performance Computing, Kaiserslautern, Germany.

Journal of Medical Imaging (Bellingham, Wash.)
|January 8, 2021
PubMed
Summary

Deep neural networks for brain tumor segmentation excel on benchmarks but struggle with real-world generalization. A U-Net model demonstrated sufficient performance, highlighting limitations in current medical image analysis techniques.

Keywords:
brain tumorsdeep learninggeneralizationsegmentation

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Area of Science:

  • Medical Image Analysis
  • Artificial Intelligence in Medicine
  • Neuro-oncology

Background:

  • Brain tumor segmentation is crucial for diagnosis and treatment planning.
  • Current deep learning models achieve high performance on benchmark datasets.
  • Clinical applicability of these models remains unevaluated.

Purpose of the Study:

  • To investigate the generalization performance of deep neural networks (DNNs) for brain tumor segmentation in clinical practice.
  • To evaluate state-of-the-art segmentation methods and propose modifications for improved generalization.

Main Methods:

  • Evaluation of three state-of-the-art methods, a U-Net architecture, and a cascadic Mumford-Shah approach.
  • Implementation of two topology-preserving modifications to enhance generalization.
  • Comparative analysis of model performance on benchmark versus clinical data.

Main Results:

  • A well-trained U-Net architecture demonstrated the best generalization performance.
  • Advanced model extensions were found to be potentially detrimental in realistic scenarios.
  • Generalization capabilities of DNNs in medical image analysis are significantly limited.

Conclusions:

  • Deep neural networks exhibit severely limited generalization in brain tumor segmentation for clinical practice.
  • Existing network topologies are optimized for benchmark datasets, not real-world application.
  • Simpler, well-trained models like U-Net may be more suitable for clinical deployment.