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Updated: Nov 21, 2025

Chemical Inactivation of the E3 Ubiquitin Ligase Cereblon by Pomalidomide-based Homo-PROTACs
Published on: May 15, 2019
Multiple cereblon genetic changes are associated with acquired resistance to lenalidomide or pomalidomide in multiple
Sarah Gooding1,2,3,4, Naser Ansari-Pour3,5, Fadi Towfic6
1MRC Molecular Haematology Unit, Weatherall Institute of Molecular Medicine, University of Oxford, Oxford, United Kingdom.
Abstract:
Emergence of drug resistance to all available therapies is the major challenge to improving survival in myeloma. Cereblon (CRBN) is the essential binding protein of the widely used immunomodulatory drugs (IMiDs) and novel CRBN E3 ligase modulator drugs (CELMoDs) in myeloma, as well as certain proteolysis targeting chimeras (PROTACs), in development for a range of diseases. Using whole-genome sequencing (WGS) data from 455 patients and RNA sequencing (RNASeq) data from 655 patients, including newly diagnosed (WGS, n = 198; RNASeq, n = 437), lenalidomide (LEN)-refractory (WGS, n = 203; RNASeq, n = 176), and pomalidomide (POM)-refractory cohorts (WGS, n = 54; RNASeq, n = 42), we found incremental increases in the frequency of 3 CRBN aberrations, namely point mutations, copy losses/structural variations, and a specific variant transcript (exon 10 spliced), with progressive IMiD exposure, until almost one-third of patients had CBRN alterations by the time they were POM refractory. We found all 3 CRBN aberrations were associated with inferior outcomes to POM in those already refractory to LEN, including those with gene copy losses and structural variations, a finding not previously described. This represents the first comprehensive analysis and largest data set of CBRN alterations in myeloma patients as they progress through therapy. It will help inform patient selection for sequential therapies with CRBN-targeting drugs.
Insights
Drug resistance in myeloma is a major challenge. This study reveals increasing Cereblon (CRBN) alterations with immunomodulatory drug (IMiD) exposure, impacting treatment outcomes and guiding CRBN-targeted therapy selection.
Area of Science:
- Myeloma therapeutics
- Genomic alterations in cancer
- Drug resistance mechanisms
Background:
- Cereblon (CRBN) is a key target for immunomodulatory drugs (IMiDs) and novel CELMoDs in myeloma treatment.
- Drug resistance, particularly to IMiDs, significantly limits survival improvements in multiple myeloma.
- Understanding CRBN alterations is crucial for developing effective sequential therapies.
Purpose of the Study:
- To comprehensively analyze the frequency and types of CRBN aberrations in myeloma patients undergoing sequential therapies.
- To investigate the association between CRBN alterations and treatment outcomes with pomalidomide (POM) in lenalidomide (LEN)-refractory patients.
- To establish the largest dataset to date on CRBN alterations in progressing myeloma.
Main Methods:
- Whole-genome sequencing (WGS) and RNA sequencing (RNASeq) data from 455 and 655 myeloma patients, respectively.
- Analysis of newly diagnosed, LEN-refractory, and POM-refractory patient cohorts.
- Assessment of CRBN point mutations, copy losses/structural variations, and a specific variant transcript (exon 10 spliced).
Main Results:
- CRBN aberrations (point mutations, copy losses/structural variations, exon 10 splicing) increased with progressive IMiD exposure, reaching nearly one-third in POM-refractory patients.
- All three CRBN aberration types were associated with inferior outcomes to POM in patients previously refractory to LEN.
- Gene copy losses and structural variations showed a previously undescribed association with poor POM response.
Conclusions:
- CRBN alterations accumulate with sequential IMiD therapy in myeloma, representing a significant mechanism of resistance.
- The presence of CRBN aberrations predicts poor response to pomalidomide in lenalidomide-refractory patients.
- This comprehensive analysis provides critical insights for patient selection in sequential CRBN-targeted therapies for myeloma.
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