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Updated: Nov 21, 2025

Super-resolution Imaging of Proteus mirabilis Biofilm by Expansion Microscopy
Published on: July 18, 2025
Amikacin and bacteriophage treatment modulates outer membrane proteins composition in Proteus mirabilis biofilm
Agnieszka Maszewska1, Magdalena Moryl2, Junli Wu3
1Department of Biology of Bacteria, Institute of Microbiology, Biotechnology and Immunology, Faculty of Biology and Environmental Protection, University of Lodz, Banacha 12/16, 90-237, Lodz, Poland.
Abstract:
Modification of outer membrane proteins (OMPs) is the first line of Gram-negative bacteria defence against antimicrobials. Here we point to Proteus mirabilis OMPs and their role in antibiotic and phage resistance. Protein profiles of amikacin (AMKrsv), phage (Brsv) and amikacin/phage (AMK/Brsv) resistant variants of P. mirabilis were compared to that obtained for a wild strain. In resistant variants there were identified 14, 1, 5 overexpressed and 13, 5, 1 downregulated proteins for AMKrsv, Brsv and AMK/Brsv, respectively. Application of phages with amikacin led to reducing the number of up- and downregulated proteins compared to single antibiotic treatment. Proteins isolated in AMKrsv are involved in protein biosynthesis, transcription and signal transduction, which correspond to well-known mechanisms of bacteria resistance to aminoglycosides. In isolated OMPs several cytoplasmic proteins, important in antibiotic resistance, were identified, probably as a result of environmental stress, e.g. elongation factor Tu, asparaginyl-tRNA and aspartyl-tRNA synthetases. In Brsv there were identified: NusA and dynamin superfamily protein which could play a role in bacteriophage resistance. In the resistant variants proteins associated with resistance mechanisms occurring in biofilm, e.g. polyphosphate kinase, flagella basal body rod protein were detected. These results indicate proteins important in the development of P. mirabilis antibiofilm therapies.
Insights
Proteus mirabilis outer membrane proteins (OMPs) change in response to amikacin and phage treatments. Combined amikacin-phage therapy reduced protein alterations, suggesting potential for new antibiofilm strategies.
Area of Science:
- Microbiology
- Bacterial Outer Membrane Proteins
- Antimicrobial Resistance
Background:
- Gram-negative bacteria, like Proteus mirabilis, utilize outer membrane proteins (OMPs) as a primary defense against antimicrobials.
- Understanding OMP modifications is crucial for developing effective treatments against antibiotic and bacteriophage resistance.
Purpose of the Study:
- To investigate the role of Proteus mirabilis OMPs in resistance to amikacin and bacteriophages.
- To compare protein expression profiles in wild-type and resistant P. mirabilis variants.
Main Methods:
- Proteomic analysis comparing wild-type P. mirabilis with amikacin-resistant (AMKrsv), phage-resistant (Brsv), and combined amikacin/phage-resistant (AMK/Brsv) variants.
- Identification and quantification of overexpressed and downregulated proteins in resistant strains.
Main Results:
- Resistant variants exhibited significant changes in OMP profiles, with 14, 1, and 5 overexpressed proteins and 13, 5, and 1 downregulated proteins in AMKrsv, Brsv, and AMK/Brsv strains, respectively.
- Combined amikacin-phage treatment resulted in fewer protein alterations compared to single-agent treatments.
- Identified proteins in resistant strains are involved in protein biosynthesis, transcription, signal transduction, and biofilm formation, including elongation factor Tu, NusA, and polyphosphate kinase.
Conclusions:
- OMP modifications in Proteus mirabilis are key to amikacin and phage resistance.
- The combined therapeutic approach of amikacin and phages induces fewer proteomic changes, indicating a potentially more targeted resistance mechanism.
- The identified proteins offer potential targets for developing novel antibiofilm therapies against P. mirabilis.
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