Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Responses to Salt Stress02:02

Responses to Salt Stress

13.8K
Salt stress—which can be triggered by high salt concentrations in a plant’s environment—can significantly affect plant growth and crop production by influencing photosynthesis and the absorption of water and nutrients.
13.8K
Light Acquisition02:16

Light Acquisition

9.0K
In order to produce glucose, plants need to capture sufficient light energy. Many modern plants have evolved leaves specialized for light acquisition. Leaves can be only millimeters in width or tens of meters wide, depending on the environment. Due to competition for sunlight, evolution has driven the evolution of increasingly larger leaves and taller plants, to avoid shading by their neighbors with contaminant elaboration of root architecture and mechanisms to transport water and nutrients.
9.0K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Multi-tissue Metabolic GWAS and Drought-Responsive Multi-omics Reveal the Genetic Basis of the Quinoa Metabolome.

Advanced science (Weinheim, Baden-Wurttemberg, Germany)·2026
Same author

Similar patient-reported outcomes 6 months after unicompartmental and total knee replacement for osteoarthritis: a prospective cohort study of 60,145 patients from the Australian Orthopaedic Association National Joint Replacement Registry.

Acta orthopaedica·2026
Same author

Does Transitioning to Robotic-Assisted Total Knee Arthroplasty Change Surgeon Revision Risk or Failure Modes?: A Baseline Comparative Analysis Before and After Robotic Adoption.

JB & JS open access·2026
Same author

Grafting on resistant rootstocks alleviates salt stress on tomato by enhancing morpho-physiological and biochemical traits.

Protoplasma·2026
Same author

Genomics Approach Links ROS-Scavenging to Enhanced Lateral Root Development Under Salt Stress in Tomato.

Plant, cell & environment·2026
Same author

Robotic-assisted surgery and functional alignment in total knee arthroplasty: the RASKAL registry-nested 2 × 2 factorial randomized trial.

The bone & joint journal·2026

Related Experiment Video

Updated: Nov 20, 2025

Production of Arbuscular Mycorrhizal (AM) Fungal Inoculum and Phenotypic Evaluation of Rice and AM Symbiosis Under Saline Conditions
07:43

Production of Arbuscular Mycorrhizal (AM) Fungal Inoculum and Phenotypic Evaluation of Rice and AM Symbiosis Under Saline Conditions

Published on: March 14, 2025

523

Assessing Rice Salinity Tolerance: From Phenomics to Association Mapping.

Nadia Al-Tamimi1, Helena Oakey2, Mark Tester1

  • 1Division of Biological and Environmental Sciences and Engineering (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia.

Methods in Molecular Biology (Clifton, N.J.)
|January 20, 2021
PubMed
Summary

Rice salinity tolerance is crucial for food security. This study introduces high-throughput phenotyping and analysis methods to identify genetic loci for improved rice salt tolerance, aiding crop breeding.

Keywords:
Association mappingForward geneticsGWASHigh-throughput phenotypingPlant imagingRiceSalinityStatistical genetics

More Related Videos

Author Spotlight: Unraveling Plant Responses to Abiotic Stresses Using the PlantScreen Robotic Platform
06:28

Author Spotlight: Unraveling Plant Responses to Abiotic Stresses Using the PlantScreen Robotic Platform

Published on: June 7, 2024

2.3K
A Telemetric, Gravimetric Platform for Real-Time Physiological Phenotyping of Plant–Environment Interactions
15:30

A Telemetric, Gravimetric Platform for Real-Time Physiological Phenotyping of Plant–Environment Interactions

Published on: August 5, 2020

12.2K

Related Experiment Videos

Last Updated: Nov 20, 2025

Production of Arbuscular Mycorrhizal (AM) Fungal Inoculum and Phenotypic Evaluation of Rice and AM Symbiosis Under Saline Conditions
07:43

Production of Arbuscular Mycorrhizal (AM) Fungal Inoculum and Phenotypic Evaluation of Rice and AM Symbiosis Under Saline Conditions

Published on: March 14, 2025

523
Author Spotlight: Unraveling Plant Responses to Abiotic Stresses Using the PlantScreen Robotic Platform
06:28

Author Spotlight: Unraveling Plant Responses to Abiotic Stresses Using the PlantScreen Robotic Platform

Published on: June 7, 2024

2.3K
A Telemetric, Gravimetric Platform for Real-Time Physiological Phenotyping of Plant–Environment Interactions
15:30

A Telemetric, Gravimetric Platform for Real-Time Physiological Phenotyping of Plant–Environment Interactions

Published on: August 5, 2020

12.2K

Area of Science:

  • Agricultural Science
  • Plant Biology
  • Genetics

Background:

  • Rice is highly sensitive to soil salinity, experiencing significant yield reductions.
  • Salinity stress poses a major threat to global food security, particularly for rice production.
  • Understanding the genetic basis of rice salinity tolerance is essential for developing resilient crop varieties.

Purpose of the Study:

  • To provide guidelines for assessing rice salinity tolerance using high-throughput phenotyping (HTP).
  • To suggest improved analysis methods, including stress indices and computer scripts, for salinity tolerance studies.
  • To facilitate the identification of genetic loci associated with salinity tolerance through genome-wide association studies (GWAS).

Main Methods:

  • Utilizing a high-throughput phenotyping platform (HTP) with digital imaging for early-stage rice phenotyping.
  • Implementing improved analysis methods incorporating stress indices for quantitative salinity tolerance assessment.
  • Employing computer scripts for experimental design, genome-wide association studies (GWAS), and Manhattan plot generation.

Main Results:

  • Developed protocols for high-throughput assessment of rice salinity tolerance at the seedling/early tillering stage.
  • Provided computer scripts enabling GWAS, multi-testing corrections, and identification of salinity tolerance loci.
  • Demonstrated the utility of HTP and provided tools applicable to various stress and GWAS experiments.

Conclusions:

  • The study offers a comprehensive framework for assessing and understanding rice salinity tolerance.
  • The provided methodologies and scripts can accelerate the genetic dissection of salinity tolerance in rice.
  • These tools are valuable for breeding salt-tolerant rice varieties to enhance food security.