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Related Concept Videos

Membrane Fluidity01:26

Membrane Fluidity

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Membrane fluidity is explained by the fluid mosaic model of the cell membrane, which describes the plasma membrane structure as a mosaic of components—including phospholipids, cholesterol, proteins, and carbohydrates—that gives the membrane a fluid character.
Mosaic nature of the membrane
The mosaic characteristic of the membrane helps the plasma membrane remain fluid. The integral proteins and lipids exist as separate but loosely-attached molecules in the membrane. The membrane is...
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Single-Molecule Imaging of Lateral Mobility and Ion Channel Activity in Lipid Bilayers using Total Internal Reflection Fluorescence TIRF Microscopy
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Solution Conformations Shed Light on PROTAC Cell Permeability.

Yoseph Atilaw1, Vasanthanathan Poongavanam1, Caroline Svensson Nilsson1

  • 1Department of Chemistry - BMC, Uppsala University, SE-75123 Uppsala, Sweden.

ACS Medicinal Chemistry Letters
|January 25, 2021
PubMed
Summary
This summary is machine-generated.

Proteolysis targeting chimeras (PROTACs) can enter cells despite their size. This study reveals PROTACs achieve cell permeability through molecular chameleonicity, adapting their shape and polarity.

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Area of Science:

  • Medicinal Chemistry
  • Structural Biology
  • Drug Discovery

Background:

  • Proteolysis targeting chimeras (PROTACs) are bifunctional molecules designed for targeted protein degradation.
  • Their complex chemical structure often presents challenges in achieving favorable ADME properties, including cell permeability.
  • Understanding the structural basis of PROTAC cell permeability is crucial for advancing drug discovery.

Purpose of the Study:

  • To provide the first structural insights into the cell permeability of a VHL-based PROTAC.
  • To elucidate the conformational dynamics of PROTACs in environments mimicking cellular compartments and membranes.
  • To identify structural features that facilitate PROTAC entry into cells.

Main Methods:

  • Nuclear Magnetic Resonance (NMR) spectroscopy was employed to study the conformational behavior of a VHL-based PROTAC (compound 1).
  • Conformational analysis was performed in solutions simulating extracellular, intracellular, and cell membrane interior environments.
  • Key interactions, such as hydrogen bonds and π-π interactions, were investigated.

Main Results:

  • Compound 1 demonstrated cell permeability despite its high molecular weight, polarity, and numerous rotatable bonds.
  • NMR studies revealed that compound 1 adopts elongated, polar conformations in aqueous-like solutions and folded conformations with reduced polar surface area in chloroform.
  • Intramolecular hydrogen bonds, nonclassical hydrogen bonds, π-π interactions, and shielding of amide groups contribute to minimizing size and polarity for membrane transit.

Conclusions:

  • Molecular chameleonicity, the ability to adopt different conformations, is critical for the cell permeability of this VHL-based PROTAC.
  • The findings provide a structural basis for designing PROTACs with improved cell penetration capabilities.
  • This study highlights the importance of conformational flexibility in overcoming ADME challenges in PROTAC drug discovery.