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Updated: Nov 19, 2025

Visualizing and Quantifying Endonuclease-Based Site-Specific DNA Damage
Published on: August 21, 2021
Sensing R-Loop-Associated DNA Damage to Safeguard Genome Stability
Carlo Rinaldi1, Paolo Pizzul1, Maria Pia Longhese1
1Dipartimento di Biotecnologie e Bioscienze, Università di Milano-Bicocca, Milan, Italy.
R-loops, structures formed during transcription, can threaten genome stability. This review explores how R-loops impact DNA damage and the roles of ATR and ATM kinases in the DNA damage response.
Area of Science:
- Molecular Biology
- Genetics
- Biochemistry
Background:
- Transcription and replication compete for DNA, forming R-loops.
- R-loops are crucial for physiology but can cause DNA damage when dysregulated.
- R-loop homeostasis is tightly controlled by various factors.
Purpose of the Study:
- To review recent findings on R-loop impact on genome stability.
- To discuss the orchestration of cellular responses to unscheduled R-loop formation.
- To highlight the role of ATR and ATM kinases in R-loop-dependent DNA damage response.
Main Methods:
- Literature review of recent findings on R-loop homeostasis.
- Analysis of the role of specific kinases in DNA damage response.
- Discussion of regulatory mechanisms controlling R-loop formation, stabilization, and resolution.
Main Results:
- R-loop formation is a natural process during transcription.
- Altered R-loop levels and distribution lead to genome instability.
- ATM- and Rad3-related (ATR) and Ataxia-telangiectasia-mutated (ATM) kinases are key in R-loop-dependent DNA damage response.
Conclusions:
- Understanding R-loop homeostasis is crucial for genome integrity.
- ATR and ATM kinases play significant roles in managing R-loop-induced DNA damage.
- Further research is needed to fully elucidate R-loop effects and cellular responses.
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