Mispair-bound human MutS-MutL complex triggers DNA incisions and activates mismatch repair
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Updated: Nov 19, 2025

Visualizing and Quantifying Endonuclease-Based Site-Specific DNA Damage
Published on: August 21, 2021
Janice Ortega1, Grace Sanghee Lee2,3, Liya Gu1
1Department of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Abstract:
DNA mismatch repair (MMR) relies on MutS and MutL ATPases for mismatch recognition and strand-specific nuclease recruitment to remove mispaired bases in daughter strands. However, whether the MutS-MutL complex coordinates MMR by ATP-dependent sliding on DNA or protein-protein interactions between the mismatch and strand discrimination signal is ambiguous. Using functional MMR assays and systems preventing proteins from sliding, we show that sliding of human MutSα is required not for MMR initiation, but for final mismatch removal. MutSα recruits MutLα to form a mismatch-bound complex, which initiates MMR by nicking the daughter strand 5' to the mismatch. Exonuclease 1 (Exo1) is then recruited to the nick and conducts 5' → 3' excision. ATP-dependent MutSα dissociation from the mismatch is necessary for Exo1 to remove the mispaired base when the excision reaches the mismatch. Therefore, our study has resolved a long-standing puzzle, and provided new insights into the mechanism of MMR initiation and mispair removal.
Insights
DNA mismatch repair (MMR) requires MutSα sliding for efficient base removal, not initiation. This process ensures accurate DNA repair by coordinating protein interactions and DNA strand discrimination.
Area of Science:
- Molecular Biology
- Genetics
- Biochemistry
Background:
- DNA mismatch repair (MMR) is crucial for maintaining genomic stability.
- The roles of MutS and MutL ATPases in MMR initiation and execution remain incompletely understood.
- The mechanism of MutS-MutL complex coordination, particularly the necessity of ATP-dependent sliding, is debated.
Purpose of the Study:
- To elucidate the precise role of human MutSα sliding in DNA mismatch repair.
- To differentiate between sliding and protein-protein interactions in MMR initiation and execution.
- To resolve ambiguities in the MMR pathway concerning mismatch recognition and removal.
Main Methods:
- Functional DNA mismatch repair (MMR) assays were employed.
- Experimental systems were designed to inhibit protein sliding on DNA.
- The recruitment and activity of key MMR proteins, including MutSα, MutLα, and Exonuclease 1 (Exo1), were analyzed.
Main Results:
- MutSα sliding is not essential for MMR initiation but is critical for the final removal of mispaired bases.
- MutSα recruits MutLα to form a complex that nicks the daughter strand 5' to the mismatch.
- Exonuclease 1 (Exo1) is recruited to the nick for 5'→3' excision, and its activity is dependent on MutSα dissociation from the mismatch.
Conclusions:
- ATP-dependent sliding of MutSα is required for efficient mismatch excision, not initiation.
- The study clarifies the sequential events in MMR, involving nicking, recruitment of Exo1, and ATP-dependent dissociation for complete repair.
- These findings provide novel mechanistic insights into DNA mismatch repair and its regulation.
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