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Correlating Gene-specific DNA Methylation Changes with Expression and Transcriptional Activity of Astrocytic KCNJ10 Kir4.1
Published on: September 26, 2015
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A ketogenic diet differentially affects neuron and astrocyte transcription
Scott J Koppel1,2, Dong Pei3, Heather M Wilkins1,4
1University of Kansas Alzheimer's Disease Center, Kansas City, KS, USA.
Journal of Neurochemistry
|February 4, 2021
Summary
Ketogenic diets (KDs) alter brain metabolism differently in neurons and astrocytes. These changes show potential relevance to neurodegenerative diseases like Alzheimer's disease (AD).
Area of Science:
- Neuroscience
- Metabolic research
- Molecular biology
Background:
- Ketogenic diets (KDs) are known to alter brain metabolism, but their specific effects on neuronal and astrocyte transcription are not fully understood.
- Brain region-specific responses and varied mechanisms may contribute to the diverse effects of KDs.
Purpose of the Study:
- To investigate the differential impact of a ketogenic diet on the transcriptional profiles of brain neurons and astrocytes.
- To identify specific molecular pathways affected by KDs in the brain and explore their potential relevance to neurodegenerative diseases, particularly Alzheimer's disease (AD).
Main Methods:
- Male C57Bl6/N mice were fed either a 3-month ketogenic diet (KD) or a standard chow diet.
- Enriched neuron and astrocyte fractions were isolated from mouse brains.
- RNA-sequencing (RNA-Seq) was employed to analyze transcriptional changes in response to the KD.
Main Results:
- Neurons from KD-treated mice exhibited general transcriptional pathway activation.
- Astrocytes from KD-treated mice displayed a mixed pattern of transcriptional pathway suppression and activation.
- KDs significantly impacted pathways related to mitochondrial function, endoplasmic reticulum function, insulin signaling, and inflammation.
- Unbiased analysis revealed KD-induced transcriptional changes strongly implicated pathways altered in Alzheimer's disease (AD).
Conclusions:
- Ketogenic diets exert differential transcriptional effects on brain neurons and astrocytes.
- KD-induced brain changes are potentially relevant to neurodegenerative conditions such as Alzheimer's disease.
- This study provides unbiased evidence linking KD-driven molecular alterations to pathways implicated in AD pathogenesis.

