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Updated: Nov 18, 2025

Exploring the Root Microbiome: Extracting Bacterial Community Data from the Soil, Rhizosphere, and Root Endosphere
Published on: May 2, 2018
Genome-Resolved Metagenomics Is Essential for Unlocking the Microbial Black Box of the Soil
Leandro Nascimento Lemos1, Lucas William Mendes2, Petr Baldrian3
1National Laboratory for Scientific Computing (LNCC), Petrópolis, Rio de Janeiro, Brazil.
Abstract:
Despite several efforts to unravel the microbial diversity of soil, most microbes are still unknown. A recent large-scale effort based on genome-resolved metagenomics by Nayfach et al. has demonstrated how this approach can expand our understanding of novel bacterial lineages, including those from soils. Genomic catalogs of soil microbiomes are now enabling a deeper investigation of the evolutionary and functional role of high-complex soil microbiomes, promoting new knowledge from the reuse and sharing of multi-omics data.
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