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Published on: March 5, 2017
Fuzzy Association of an Intrinsically Disordered Protein with Acidic Membranes
Alan Hicks1,1,2, Cristian A Escobar1,3, Timothy A Cross1,1,3
1Institute of Molecular Biophysics, Department of Physics, and Department of Chemistry and Biochemistry, Florida State University, Tallahassee, Florida 32306, United States.
Abstract:
Many physiological and pathophysiological processes, including Mycobacterium tuberculosis (Mtb) cell division, may involve fuzzy membrane association by proteins via intrinsically disordered regions. The fuzziness is extreme when the conformation and pose of the bound protein and the composition of the proximal lipids are all highly dynamic. Here, we tackled the challenge in characterizing the extreme fuzzy membrane association of the disordered, cytoplasmic N-terminal region (NT) of ChiZ, an Mtb divisome protein, by combining solution and solid-state NMR spectroscopy and molecular dynamics simulations. While membrane-associated NT does not gain any secondary structure, its interactions with lipids are not random, but formed largely by Arg residues predominantly in the second, conserved half of the NT sequence. As NT frolics on the membrane, lipids quickly redistribute, with acidic lipids, relative to zwitterionic lipids, preferentially taking up Arg-proximal positions. The asymmetric engagement of NT arises partly from competition between acidic lipids and acidic residues, all in the first half of NT, for Arg interactions. This asymmetry is accentuated by membrane insertion of the downstream transmembrane helix. This type of semispecific molecular recognition may be a general mechanism by which disordered proteins target membranes.
Insights
Disordered protein regions in Mycobacterium tuberculosis (Mtb) interact dynamically with cell membranes. Arginine residues drive these fuzzy interactions, influencing lipid positioning and protein binding specificity.
Area of Science:
- Biophysics
- Molecular Biology
- Microbiology
Background:
- Many cellular processes involve proteins interacting with lipid membranes.
- Intrinsically disordered protein regions contribute to dynamic membrane associations.
- Mycobacterium tuberculosis (Mtb) cell division relies on complex protein-membrane interactions.
Purpose of the Study:
- To characterize the extreme fuzzy membrane association of the Mtb ChiZ protein's N-terminal region (NT).
- To elucidate the role of protein dynamics and lipid composition in this interaction.
- To investigate the molecular recognition mechanisms of disordered proteins at membranes.
Main Methods:
- Solution and solid-state NMR spectroscopy
- Molecular dynamics simulations
- Biophysical characterization of protein-lipid interactions
Main Results:
- The NT region remains disordered upon membrane association.
- Arginine residues, particularly in the conserved second half of NT, mediate lipid interactions.
- Lipids dynamically redistribute, with acidic lipids favoring Arg-proximal positions.
- Asymmetric protein engagement results from competition for Arg interactions and is enhanced by a transmembrane helix.
Conclusions:
- Fuzzy membrane association of disordered proteins is driven by specific residue interactions, not just random encounters.
- Arginine-mediated interactions and lipid redistribution contribute to semispecific molecular recognition.
- This mechanism may be a general strategy for disordered proteins targeting biological membranes.
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