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Estimating Bilateral Atrial Function by Cardiovascular Magnetic Resonance Feature Tracking in Patients with Paroxysmal Atrial Fibrillation
Published on: July 20, 2022
Common differentially expressed genes and pathways correlating both coronary artery disease and atrial fibrillation
1Department of Biomedical Sciences and Pathobiology, College of Veterinary Medicine, Virginia Tech, Blacksburg, VA 24061, USA.
Insights
This study identified 21 common genes linking coronary artery disease (CAD) and atrial fibrillation (AF). These genes highlight key proteins like MME, TfR1, and LAMP1, suggesting their crucial role in the development of both cardiovascular conditions.
Area of Science:
- Cardiovascular Biology
- Molecular Genetics
- Bioinformatics
Background:
- Coronary artery disease (CAD) and atrial fibrillation (AF) frequently coexist, sharing risk factors like hypertension and diabetes.
- The molecular mechanisms underlying the concurrent occurrence of CAD and AF remain poorly understood.
Purpose of the Study:
- To identify common differentially expressed genes (DEGs) associated with both CAD and AF.
- To elucidate the molecular pathways and protein interactions involved in the shared pathogenesis of CAD and AF.
Main Methods:
- Analysis of gene expression datasets (GSE71226 for CAD, GSE31821 for AF) using GEO2R.
- Identification of common DEGs via Venn Diagram analysis.
- Pathway and enrichment analysis using KEGG, DAVID, and STRING databases.
Main Results:
- Identified 565 up- and 1367 down-regulated genes in CAD, and 293 up- and 68 down-regulated genes in AF.
- Discovered 21 common DEGs between CAD and AF datasets.
- Uncovered 4 CAD-related and 21 AF-related pathways, 3 significant gene enrichments, and 3 key proteins: MME, TfR1, and LAMP1.
Conclusions:
- The identified 21 common DEGs provide molecular insights into the shared development of CAD and AF.
- The proteins MME, TfR1, and LAMP1 emerge as potentially central players in the pathogenesis of both conditions.
- Further research into these proteins could reveal novel therapeutic targets for patients with coexisting CAD and AF.
Abstract:
Coronary artery disease (CAD) and atrial fibrillation (AF) share common risk factors, such as hypertension and diabetes. The patients with CAD often suffer concomitantly AF, but how two diseases interact with each other at cellular and molecular levels remain largely unknown. The present study aims to dissect the common differentially expressed genes (DEGs) that are concurrently associated with CAD and AF. Two datasets [GSE71226 for CAD) and GSE31821 for AF] were analyzed with GEO2R and Venn Diagram to identify the DEGs. Signaling pathways, gene enrichments, and protein-protein interactions (PPI) of the identified common DEGs were further analyzed with Kyoto Encyclopedia of Gene and Genome (KEGG), Database for Annotation, Visualization and Integrated Discovery (DAVID), and Search Toll for the Retrieval of Interacting Genes (STRING). 565 up- and 1367 down-regulated genes in GSE71226 and 293 up- and 68 down-regulated genes in GSE31821 were identified. Among those, 21 common DEGs were discovered from both datasets, which lead to the findings of 4 CAD and 21 AF pathways, 3 significant gene enrichments (intracellular cytoplasm, protein binding, and vascular labyrinthine layer), and 3 key proteins (membrane metallo-endopeptidase (MME), transferrin receptor 1 (TfR1), and Lysosome-associated membrane glycoprotein 1 (LAMP1)). Together, these data implied that these three proteins may play a central role in development of both CAD and AF.
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