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Updated: Nov 17, 2025

Repressing Gene Transcription by Redirecting Cellular Machinery with Chemical Epigenetic Modifiers
Published on: September 20, 2018
Targeting Epigenetic Regulators with Covalent Small-Molecule Inhibitors
Yi Zhang1, Deqin Rong1, Bingbing Li1
1Guangdong Key Laboratory of Chiral Molecule and Drug Discovery, School of Pharmaceutical Sciences, Sun Yat-Sen University, Guangzhou 510006, China.
Abstract:
Epigenetic regulation of gene expression plays a critical role in various physiological processes, and epigenetic dysregulation is implicated in a number of diseases, prominently including cancer. Epigenetic regulators have been validated as potential therapeutic targets, and significant progress has been made in the discovery and development of epigenetic-based inhibitors. However, successful epigenetic drug discovery is still facing challenges, including moderate selectivity, limited efficacy, and acquired drug resistance. Inspired by the advantages of covalent small-molecule inhibitors, targeted covalent inhibition has attracted increasing interest in epigenetic drug discovery. In this review, we comprehensively summarize the structure-based design and characterization of covalent inhibitors targeting epigenetic writers, readers, and erasers and highlight their potential benefits in enhancing selectivity across the enzyme family and improving in vivo efficacy. We also discuss the challenges and opportunities of covalent small-molecule inhibitors and hope to shed light on future epigenetic drug discovery.
Insights
Targeted covalent inhibitors offer a promising approach to overcome challenges in epigenetic drug discovery. This review details their design and potential for enhanced selectivity and efficacy against cancer.
Area of Science:
- Biochemistry
- Pharmacology
- Molecular Biology
Background:
- Epigenetic regulation controls gene expression, crucial for health and disease, particularly cancer.
- Epigenetic dysregulation is linked to diseases, making epigenetic regulators attractive therapeutic targets.
- Current epigenetic inhibitors face challenges like moderate selectivity, limited efficacy, and drug resistance.
Purpose of the Study:
- To review the structure-based design and characterization of covalent inhibitors targeting epigenetic regulators.
- To highlight the potential benefits of covalent inhibitors in improving selectivity and in vivo efficacy.
- To discuss challenges and opportunities for covalent small-molecule inhibitors in epigenetic drug discovery.
Main Methods:
- Comprehensive literature review on structure-based design of covalent inhibitors.
- Analysis of covalent inhibitors targeting epigenetic writers, readers, and erasers.
- Discussion of in vitro and in vivo studies evaluating inhibitor performance.
Main Results:
- Covalent inhibitors demonstrate potential for enhanced selectivity across epigenetic enzyme families.
- Targeted covalent inhibition can improve in vivo efficacy compared to non-covalent counterparts.
- Structure-based design facilitates the development of potent and selective epigenetic drugs.
Conclusions:
- Covalent small-molecule inhibitors represent a promising strategy to overcome limitations in epigenetic drug development.
- Further research into targeted covalent inhibition can advance epigenetic therapies for cancer and other diseases.
- Understanding the challenges and opportunities will guide future epigenetic drug discovery efforts.
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