MitoFlex: an efficient, high-performance toolkit for animal mitogenome assembly, annotation and visualization
Jun-Yu Li1, Wei-Xuan Li1, An-Tai Wang1
1Shenzhen Key Laboratory of Marine Bioresource and Eco-environmental Science, Guangdong Engineering Research Center for Marine Algal Biotechnology, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen 518060, PR China.
Summary:
MitoFlex is a linux-based mitochondrial genome analysis toolkit, which provides a complete workflow of raw data filtering, de novo assembly, mitochondrial genome identification and annotation for animal High Throughput Sequencing data. The overall performance was compared between MitoFlex and its analogue MitoZ, in terms of protein-coding gene recovery, memory consumption and processing speed.
Availabilityand Implementation:
MitoFlex is available at https://github.com/Prunoideae/MitoFlex under GPLv3 license.
Supplementary Information:
Supplementary data are available at Bioinformatics online.
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