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Updated: Nov 16, 2025

Super-resolution Imaging of Proteus mirabilis Biofilm by Expansion Microscopy
Published on: July 18, 2025
Characterization and complete genome sequence of Privateer, a highly prolate Proteus mirabilis podophage
James E Corban1,2,3, Jolene Ramsey1,2
1Department of Biochemistry & Biophysics, Texas A&M University, College Station, TX, USA.
Abstract:
The Gram-negative bacterium Proteus mirabilis causes a large proportion of catheter-associated urinary tract infections, which are among the world's most common nosocomial infections. Here, we characterize P. mirabilis bacteriophage Privateer, a prolate podophage of the C3 morphotype isolated from Texas wastewater treatment plant activated sludge. Basic characterization assays demonstrated Privateer has a latent period of ~40 min and average burst size around 140. In the 90.7 kb Privateer genome, 43 functions were assigned for the 144 predicted protein-coding genes. Genes encoding DNA replication proteins, DNA modification proteins, four tRNAs, lysis proteins, and structural proteins were identified. Cesium-gradient purified Privateer particles analyzed via LC-MS/MS verified the presence of several predicted structural proteins, including a longer, minor capsid protein apparently produced by translational frameshift. Comparative analysis demonstrated Privateer shares 83% nucleotide similarity with Cronobacter phage vB_CsaP_009, but low nucleotide similarity with other known phages. Predicted structural proteins in Privateer appear to have evolutionary relationships with other prolate podophages, in particular the Kuraviruses.
Insights
This study characterizes bacteriophage Privateer, a virus that infects Proteus mirabilis, a common cause of catheter-associated urinary tract infections. Privateer shows potential for therapeutic applications against these difficult-to-treat bacterial infections.
Area of Science:
- Microbiology
- Virology
- Genomics
Background:
- Proteus mirabilis is a Gram-negative bacterium responsible for numerous catheter-associated urinary tract infections (CAUTIs).
- CAUTIs represent a significant global burden of nosocomial infections.
- Bacteriophages offer a potential alternative or adjunct to antibiotics for treating bacterial infections.
Purpose of the Study:
- To characterize the P. mirabilis bacteriophage Privateer.
- To analyze the genome and structural proteins of bacteriophage Privateer.
- To assess the evolutionary relationships of Privateer with other known bacteriophages.
Main Methods:
- Isolation and basic characterization of bacteriophage Privateer from wastewater sludge.
- Genome sequencing and bioinformatic analysis of 144 predicted genes.
- LC-MS/MS analysis of purified bacteriophage particles to verify structural proteins.
- Comparative genomic analysis with other bacteriophages.
Main Results:
- Bacteriophage Privateer exhibits a latent period of approximately 40 minutes and a burst size of around 140.
- The 90.7 kb genome contains genes for DNA replication, modification, lysis, and structural proteins.
- LC-MS/MS confirmed predicted structural proteins, including a minor capsid protein possibly arising from translational frameshifting.
- Privateer shares high nucleotide similarity with Cronobacter phage vB_CsaP_009 but low similarity with other phages.
- Structural proteins show evolutionary links to other prolate podophages, particularly Kuraviruses.
Conclusions:
- Bacteriophage Privateer is a novel prolate podophage with potential applications in combating P. mirabilis infections.
- Its genomic and proteomic characteristics provide insights into phage evolution and diversity.
- Privateer represents a promising candidate for phage therapy against CAUTIs.
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