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Using GANs with adaptive training data to search for new molecules.

Andrew E Blanchard1, Christopher Stanley1, Debsindhu Bhowmik2

  • 1Computational Sciences and Engineering Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37830, USA.

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Summary
This summary is machine-generated.

This study introduces a novel method for training Generative Adversarial Networks (GANs) by incorporating genetic algorithm concepts to prevent mode collapse. This approach enhances the exploration of chemical space for drug discovery by promoting novel compound generation.

Keywords:
Drug discoveryGenerative Adversarial NetworkSearch

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Area of Science:

  • Computational Chemistry
  • Artificial Intelligence in Drug Discovery
  • Machine Learning for Molecular Design

Background:

  • Drug discovery requires extensive exploration of vast chemical spaces.
  • Generative Adversarial Networks (GANs) are powerful tools for exploring chemical space and optimizing compounds.
  • Standard GAN training can lead to mode collapse, limiting exploration of novel chemical entities.

Purpose of the Study:

  • To develop a GAN training approach that promotes incremental exploration and mitigates mode collapse.
  • To enhance the discovery of novel chemical compounds for drug development.
  • To improve the applicability of GANs in the field of pharmaceutical research.

Main Methods:

  • Integration of Genetic Algorithm concepts into GAN training.
  • Utilizing valid generated samples to replace existing training data.
  • Implementing both random and guided selection strategies, including recombination, for data replacement.

Main Results:

  • The proposed GAN training method significantly enhances the generation of novel compounds compared to traditional approaches.
  • Updates to the training dataset through sample replacement effectively limit mode collapse.
  • Demonstrated a substantial increase in the number of unique compounds produced during training.

Conclusions:

  • The novel GAN training strategy effectively overcomes mode collapse, a common limitation in generative models.
  • This approach substantially improves the exploration of chemical space, leading to the discovery of more diverse and novel compounds.
  • The findings highlight the potential of this enhanced GAN methodology to accelerate and broaden drug discovery efforts.