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Updated: Nov 16, 2025

A Flow Cytometry-Based Cell Surface Protein Binding Assay for Assessing Selectivity and Specificity of an Anticancer Aptamer
Published on: September 13, 2022
Immunotherapy for breast cancer using EpCAM aptamer tumor-targeted gene knockdown
Ying Zhang1,2, Xuemei Xie3,4,5, Pourya Naderi Yeganeh6
1Program in Cellular and Molecular Medicine, Boston Children's Hospital, Boston, MA 02115.
Abstract:
New strategies for cancer immunotherapy are needed since most solid tumors do not respond to current approaches. Here we used epithelial cell adhesion molecule EpCAM (a tumor-associated antigen highly expressed on common epithelial cancers and their tumor-initiating cells) aptamer-linked small-interfering RNA chimeras (AsiCs) to knock down genes selectively in EpCAM+ tumors with the goal of making cancers more visible to the immune system. Knockdown of genes that function in multiple steps of cancer immunity was evaluated in aggressive triple-negative and HER2+ orthotopic, metastatic, and genetically engineered mouse breast cancer models. Gene targets were chosen whose knockdown was predicted to promote tumor neoantigen expression (Upf2, Parp1, Apex1), phagocytosis, and antigen presentation (Cd47), reduce checkpoint inhibition (Cd274), or cause tumor cell death (Mcl1). Four of the six AsiC (Upf2, Parp1, Cd47, and Mcl1) potently inhibited tumor growth and boosted tumor-infiltrating immune cell functions. AsiC mixtures were more effective than individual AsiC and could synergize with anti-PD-1 checkpoint inhibition.
Insights
New aptamer-linked small-interfering RNA chimeras (AsiCs) target EpCAM+ tumors, enhancing cancer visibility to the immune system. Four AsiCs potently inhibited tumor growth and boosted immune cell functions, showing promise for cancer immunotherapy.
Area of Science:
- Oncology
- Immunology
- Molecular Biology
Background:
- Most solid tumors resist current cancer immunotherapy strategies, necessitating novel approaches.
- Epithelial Cell Adhesion Molecule (EpCAM) is a tumor-associated antigen highly expressed on common epithelial cancers and their tumor-initiating cells.
- Targeting EpCAM offers a potential strategy to selectively deliver therapeutic agents to cancer cells.
Purpose of the Study:
- To develop and evaluate aptamer-linked small-interfering RNA chimeras (AsiCs) for targeted gene knockdown in EpCAM+ tumors.
- To enhance cancer visibility to the immune system by modulating genes involved in tumor immunity.
- To assess the efficacy of AsiCs in aggressive triple-negative and HER2+ breast cancer models.
Main Methods:
- Designed AsiCs targeting EpCAM+ tumors for selective gene knockdown.
- Selected gene targets (Upf2, Parp1, Apex1, Cd47, Cd274, Mcl1) predicted to modulate tumor immunity.
- Evaluated AsiC efficacy in orthotopic, metastatic, and genetically engineered mouse breast cancer models.
- Assessed tumor growth inhibition and tumor-infiltrating immune cell functions.
Main Results:
- Four of six tested AsiCs (Upf2, Parp1, Cd47, Mcl1) demonstrated potent tumor growth inhibition.
- AsiCs significantly boosted tumor-infiltrating immune cell functions.
- Mixtures of AsiCs were more effective than individual AsiCs and synergized with anti-PD-1 checkpoint inhibition.
Conclusions:
- EpCAM-targeted AsiCs represent a promising strategy for cancer immunotherapy.
- Targeted gene knockdown using AsiCs can enhance anti-tumor immune responses.
- Combination therapy with AsiCs and checkpoint inhibitors may overcome resistance in solid tumors.
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