Related Experiment Video
Updated: Nov 16, 2025

Oral Biofilm Sampling for Microbiome Analysis in Healthy Children
Published on: December 31, 2017
Study of Normal Flora in the Pharynx of Healthy Children
Tomohiro Oishi1, Tetsuro Muratani2, Takaaki Tanaka1
1Department Pediatrics, Kawasaki Medical School, Japan.
Insights
Bacterial flora in children
Area of Science:
- Microbiology
- Pediatrics
- Human Microbiome
Background:
- Understanding the normal bacterial flora in children is crucial for diagnosing and treating respiratory infections.
- Previous studies have not comprehensively analyzed age-related variations in pharyngeal and nasopharyngeal microbiota.
Purpose of the Study:
- To investigate and compare the bacterial isolates from the pharynx and nasopharynx of healthy children across different age groups.
- To identify age-specific differences in the composition of the normal respiratory tract flora.
Main Methods:
- Bacterial isolation and identification from pharyngeal and nasopharyngeal swabs.
- Comparison of bacterial prevalence across three age groups: infants (<1 year), toddlers (1-5 years), and school-aged children (6-15 years).
Main Results:
- Gram-positive cocci, including Streptococcus mitis/oralis and Streptococcus salivarius, predominated the pharynx.
- Gram-negative rods, such as Moraxella catarrhalis, were prevalent in the nasopharynx.
- Significant age-related variations were observed, with certain bacteria linked to dental development and otitis media showing different isolation rates across age groups.
Conclusions:
- The composition of normal respiratory tract flora in children varies significantly by both anatomical site (pharynx vs. nasopharynx) and age.
- These findings provide a baseline for understanding pediatric respiratory health and disease.
Abstract:
To improve our current understanding of normal flora in children, we investigated bacterial isolates from the pharynx and nasopharynx of 173 and 233 healthy children, respectively. The bacterial isolation rates were compared among three age groups: infants (<1 year), toddlers (1-5 years), and school-aged children (6-15 years). Gram-positive cocci were the predominant bacteria in the pharynx (Streptococcus mitis/oralis, 87.3%; Streptococcus salivarius, 54.3%; Rothia mucilaginosa, 41.6%; Staphylococcus aureus, 39.3%). Among infants, S. salivarius and Neisseria subflava, which are related to the development of teeth, were significantly lower than in the other age groups (P <0.0001, S. salivarius; P <0.01, N. subflava). With the exception of Corynebacterium pseudodiphtheriticum (44.2%, gram-positive rods), gram-negative rods largely predominated the nasopharynx (Moraxella catarrhalis, 32.1%; Moraxella nonliquefaciens, 28.3%). Among toddlers, M. catarrhalis and Streptococcus pneumoniae, which are the most common pathogens in acute otitis media, were significantly higher than in the infant group (P <0.05). Among the bacterial species implicated in pediatric respiratory infections, Streptococcus pyogenes was isolated in 3.5% of the pharyngeal samples. S. pneumoniae and Haemophilus influenzae were isolated in 22.3% and 17.2% of the nasopharyngeal samples, respectively. In conclusion, the normal flora of the respiratory tract differs not only by the sampling site but also by the age group.
More Related Videos
Related Concept Videos
Defense Mechanism Against Infection
In addition, many body organ systems have unique defenses against infection. The skin is an intact, multilayered surface preventing invasion by microorganisms unless impaired. Mucous membranes lining the mouth, nose, and eyelids are barriers...
Chronic Pharyngitis
Etiology
It often arises from persistent viral or bacterial infections affecting sinuses and tonsils.
Additional contributing factors include inadequate dental hygiene, mouth breathing, recurring tonsillitis, allergic rhinitis, laryngopharyngeal reflux, and exposure to smoke, chemicals, and other environmental pollutants. Allergic reactions to pollen, mold, and pet dander, chronic cough, excessive voice usage,...
Pharynx
Nasopharynx
The nasopharynx, bordered by the conchae of the nasal cavity, serves exclusively as an air conduit. In its superior region, the pharyngeal tonsils or adenoids are located. These tonsils are clusters of lymphoid reticular tissue akin to a lymph node. The precise...
Anatomy of Respiratory System I: Upper Respiratory Tract
Nose and nasal cavity
The nose and nasal cavity represent the main external openings of the respiratory tract....
Acute Pharyngitis
Acute pharyngitis is the inflammation of the back of the throat (pharynx), commonly resulting in a sore throat. It is a frequently encountered condition that prompts individuals to seek medical advice.
Classification
Acute pharyngitis can be categorized based on its underlying cause:
Bacterial Flora of the Large Intestine
The normal gut flora of the colon plays a critical role in generating essential vitamins such as vitamins K, B5, and B7.

