ATAD3B is a mitophagy receptor mediating clearance of oxidative stress-induced damaged mitochondrial DNA

Li Shu1, Chao Hu1, Meng Xu1

  • 1Hubei Key Laboratory of Cell Homeostasis, College of Life Sciences, Frontier Science Center for Immunology and Metabolism, Wuhan University, Wuhan, China.

The EMBO Journal
|March 5, 2021
PubMed

Insights

Researchers discovered ATAD3B, a novel mitophagy receptor that clears damaged mitochondrial DNA (mtDNA) during oxidative stress. This finding reveals a new pathway for cellular homeostasis and offers potential therapies for mitochondrial diseases.

Area of Science:

  • Cellular Biology
  • Mitochondrial Biology
  • Genetics

Background:

  • Mitochondrial DNA (mtDNA) is crucial for cellular energy production via oxidative phosphorylation.
  • Oxidative stress can damage mtDNA, leading to mitochondrial dysfunction and impaired cellular homeostasis.
  • The mechanisms for selective clearance of damaged mtDNA through mitophagy are largely unknown.

Purpose of the Study:

  • To identify novel mitophagy receptors involved in the selective removal of damaged mtDNA.
  • To elucidate the mechanism by which damaged mtDNA triggers mitophagy.
  • To explore the therapeutic potential of targeting this pathway for mitochondrial diseases.

Main Methods:

  • Identification and characterization of the ATAD3B protein as a mitophagy receptor.
  • Investigation of ATAD3B's interaction with LC3 and its role in mitophagy.
  • Analysis of ATAD3B expression and function in cells with mtDNA mutations (e.g., m.3243A>G) and MELAS patient fibroblasts.
  • Assessment of ATAD3B's role in targeting damaged mtDNA for clearance.

Main Results:

  • ATAD3B, a primate-specific protein, acts as a mitophagy receptor, promoting the clearance of oxidative stress-induced damaged mtDNA.
  • ATAD3B binds to LC3 via a LIR motif, initiating mitophagy independently of PINK1.
  • Under oxidative stress, reduced ATAD3B-ATAD3A hetero-oligomerization exposes ATAD3B, facilitating LC3 recruitment and mitophagy.
  • ATAD3B re-expression in cells with mtDNA mutations (m.3243A>G) enhances the clearance of mutated mtDNA.

Conclusions:

  • ATAD3B is a novel mitophagy receptor that selectively clears damaged mtDNA in response to oxidative stress.
  • The ATAD3B-mediated pathway provides a new mechanism for maintaining mitochondrial quality control.
  • Enhancing ATAD3B activity presents a potential therapeutic strategy for mitochondrial disorders associated with mtDNA damage.

Related Concept Videos

Translocation of Proteins into the Mitochondria01:19

Translocation of Proteins into the Mitochondria

Mitochondrial precursors are translocated to the internal subcompartments via independent mechanisms involving distinct protein machineries called translocases.
Sorting of outer membrane proteins:
Mitochondrial outer membrane proteins are of two types: the transmembrane, beta-barrel porins, and the membrane-anchored, alpha-helical proteins. Beta-barrel porin precursors are translocated by the TOM complex and inserted into the outer mitochondrial membrane by the SAM complex. In contrast,...
10.0K
Electron Transport Chain: Complex I and II01:46

Electron Transport Chain: Complex I and II

The mitochondrial electron transport chain (ETC) is the main energy generation system in the eukaryotic cells. However, mitochondria also produce cytotoxic reactive oxygen species (ROS) due to the large electron flow during oxidative phosphorylation. While Complex I is one of the primary sources of superoxide radicals, ROS production by Complex II is uncommon and may only be observed in cancer cells with mutated complexes.
ROS generation is regulated and maintained at moderate levels necessary...
16.9K
Mitochondrial Membranes01:45

Mitochondrial Membranes

A single mitochondrion is a bean-shaped organelle enclosed by a double-membrane system. The outer membrane of mitochondria is smooth and contains many porins - the integral membrane transporters. Porins enable free diffusion of ions and small uncharged molecules through the outer mitochondrial membrane but limit the transport of molecules larger than 5000 Daltons. Further, the outer mitochondrial membrane forms a unique structure called membrane contact sites with other subcellular organelles,...
14.9K
Mitochondrial Precursor Proteins01:39

Mitochondrial Precursor Proteins

Mitochondrial precursors are partially unfolded or loosely folded polypeptide chains. Newly synthesized precursors are inhibited from spontaneously folding into their native conformation by the cytosolic chaperones, heat shock proteins 70 (Hsp70), and mitochondrial import stimulation factors (MSFs). Precursors bound to MSFs are guided to the TOM70-TOM37 receptors, while precursors bound to Hsp70  chaperones are targetted to TOM20-TOM22 receptor complexes.
Most of the mitochondrial...
3.2K
Mitochondria01:37

Mitochondria

Mitochondria are eukaryotic cellular organelles that are known to produce energy through a process called oxidative phosphorylation. Besides their primary function, mitochondria are involved in various cellular processes, including cell growth, differentiation, signaling, metabolism, and senescence. Age-related changes cause a decline in mitochondrial quality and integrity due to increased mitochondrial mutations and oxidative damage. Thus, aging can severely impact mitochondrial functions,...
17.7K
The Intrinsic Apoptotic Pathway01:31

The Intrinsic Apoptotic Pathway

Internal cellular stress, such as cellular injury or hypoxia, triggers intrinsic apoptosis. The B-cell lymphoma 2 (Bcl-2) family of proteins are the primary regulators of the intrinsic apoptotic pathway. For example, during DNA damage, checkpoint proteins, such as Ataxia Telangiectasia Mutated (ATM protein) and Checkpoints Factor-2 (Chk2) proteins, are activated. These proteins phosphorylate p53 which further activates pro-apoptotic proteins, such as Bax, Bak, PUMA, and Noxa, and inhibits...
7.4K