Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Predicting Molecular Geometry02:27

Predicting Molecular Geometry

40.3K
VSEPR Theory for Determination of Electron Pair Geometries
40.3K
Phase Transitions: Melting and Freezing02:39

Phase Transitions: Melting and Freezing

13.9K
Heating a crystalline solid increases the average energy of its atoms, molecules, or ions, and the solid gets hotter. At some point, the added energy becomes large enough to partially overcome the forces holding the molecules or ions of the solid in their fixed positions, and the solid begins the process of transitioning to the liquid state or melting. At this point, the temperature of the solid stops rising, despite the continual input of heat, and it remains constant until all of the solid is...
13.9K
¹H NMR of Conformationally Flexible Molecules: Variable-Temperature NMR01:15

¹H NMR of Conformationally Flexible Molecules: Variable-Temperature NMR

1.4K
The axial and equatorial protons in cyclohexane can be distinguished by performing a variable-temperature NMR experiment. In this process, except for one proton, the remaining eleven protons are replaced by deuterium. The deuterium substitution avoids the possible peak splitting caused by the spin-spin coupling between the adjacent protons. The remaining proton flips between the axial and equatorial positions.
1.4K
Phase Transitions02:31

Phase Transitions

21.6K
Whether solid, liquid, or gas, a substance's state depends on the order and arrangement of its particles (atoms, molecules, or ions). Particles in the solid pack closely together, generally in a pattern. The particles vibrate about their fixed positions but do not move or squeeze past their neighbors. In liquids, although the particles are closely spaced, they are randomly arranged. The position of the particles are not fixed—that is, they are free to move past their neighbors to...
21.6K
Temperature Dependent Deformation01:12

Temperature Dependent Deformation

270
In a nonhomogeneous rod made up of steel and brass, restrained at both ends and subjected to a temperature change, several steps are involved in calculating the stress and compressive load. Due to the problem's static indeterminacy, one end support is disconnected, allowing the rod to experience the temperature change freely. Next, an unknown force is applied at the free end, triggering deformations in the rod's steel and brass portions. These deformations are then calculated and added...
270
Heating and Cooling Curves02:44

Heating and Cooling Curves

25.6K
When a substance—isolated from its environment—is subjected to heat changes, corresponding changes in temperature and phase of the substance is observed; this is graphically represented by heating and cooling curves.
For instance, the addition of heat raises the temperature of a solid; the amount of heat absorbed depends on the heat capacity of the solid (q = mcsolidΔT). According to thermochemistry, the relation between the amount of heat absorbed or released by a substance, q, and its...
25.6K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Derivation expansion of the general solubility equation (GSE).

Journal of pharmaceutical sciences·2026
Same author

Data Fusion of Deep Learned Molecular Embeddings for Property Prediction.

Journal of chemical information and modeling·2025
Same author

A cluster of articles in memory of Rodolfo Pinal, Ph.D.

Journal of pharmaceutical sciences·2025
Same author

Predicting Hydrocarbon Strain Energy via a Group Equivalent Machine Learning Approach.

The journal of physical chemistry. A·2024
Same author

Maximum Entropy Theory of Multiscale Coarse-Graining via Matching Thermodynamic Forces: Application to a Molecular Crystal (TATB).

The journal of physical chemistry. B·2024
Same author

Interpretable Performance Models for Energetic Materials using Parsimonious Neural Networks.

The journal of physical chemistry. A·2024
Same journal

Residue-level insights into SGLT2 inhibition and Nav1.5 selectivity of gliflozin derivatives: A molecular dynamics and pharmacophore-guided study.

Journal of molecular graphics & modelling·2026
Same journal

A benchmarking-informed structure-based virtual screening strategy targeting Lm-PTR1: Leveraging the Northern African natural products database.

Journal of molecular graphics & modelling·2026
Same journal

In Silico identification of natural and synthetic inhibitors targeting KRAS mutants (G12D, G12V, and G12C) and wild-type in pancreatic cancer.

Journal of molecular graphics & modelling·2026
Same journal

Structural evolution, mechanical and thermal stability of 7-40 mol% yttria-stabilized zirconia: First-principles investigation.

Journal of molecular graphics & modelling·2026
Same journal

Halide-encapsulated C<sub>24</sub> fullerenes as molecular redox hosts for alkali metals: A density functional theory study.

Journal of molecular graphics & modelling·2026
Same journal

Efficacy of Tinospora cordifolia bioactives as agonists of Smoothened (Smo) receptor to promote oligodendroglial lineage induction for remyelination-based therapy.

Journal of molecular graphics & modelling·2026
See all related articles

Related Experiment Video

Updated: Nov 15, 2025

Orientational Transition in a Liquid Crystal Triggered by the Thermodynamic Growth of Interfacial Wetting Sheets
06:26

Orientational Transition in a Liquid Crystal Triggered by the Thermodynamic Growth of Interfacial Wetting Sheets

Published on: May 15, 2017

7.4K

Machine learning transition temperatures from 2D structure.

Andrew E Sifain1, Betsy M Rice1, Samuel H Yalkowsky2

  • 1CCDC Army Research Laboratory, Aberdeen Proving Ground, MD, 21005, USA.

Journal of Molecular Graphics & Modelling
|March 5, 2021
PubMed
Summary
This summary is machine-generated.

Predicting material transition temperatures is crucial for discovery. This study enhances the Unified Physicochemical Property Estimation Relationships (UPPER) descriptors for machine learning, enabling accurate property prediction with data science.

Keywords:
CheminformaticsGradient boostingMachine learningMelting and boiling pointsPhase transitionsQuantitative structure-property relationships

More Related Videos

Determination of Protein-ligand Interactions Using Differential Scanning Fluorimetry
13:26

Determination of Protein-ligand Interactions Using Differential Scanning Fluorimetry

Published on: September 13, 2014

62.3K
A Protocol for Computer-Based Protein Structure and Function Prediction
16:41

A Protocol for Computer-Based Protein Structure and Function Prediction

Published on: November 3, 2011

69.3K

Related Experiment Videos

Last Updated: Nov 15, 2025

Orientational Transition in a Liquid Crystal Triggered by the Thermodynamic Growth of Interfacial Wetting Sheets
06:26

Orientational Transition in a Liquid Crystal Triggered by the Thermodynamic Growth of Interfacial Wetting Sheets

Published on: May 15, 2017

7.4K
Determination of Protein-ligand Interactions Using Differential Scanning Fluorimetry
13:26

Determination of Protein-ligand Interactions Using Differential Scanning Fluorimetry

Published on: September 13, 2014

62.3K
A Protocol for Computer-Based Protein Structure and Function Prediction
16:41

A Protocol for Computer-Based Protein Structure and Function Prediction

Published on: November 3, 2011

69.3K

Area of Science:

  • Computational chemistry
  • Materials science
  • Data science

Background:

  • Physicochemical properties like melting and boiling points are vital for materials discovery but challenging to model theoretically.
  • Data science offers powerful tools for predicting material properties from chemical datasets, complementing traditional methods.

Purpose of the Study:

  • To extend the Unified Physicochemical Property Estimation Relationships (UPPER) molecular representation for improved materials property prediction.
  • To adapt UPPER descriptors for machine learning techniques to predict thermal transition temperatures.

Main Methods:

  • Extended the UPPER molecular representation to include descriptors for sp2-bonded fragments.
  • Constructed vector representations from UPPER descriptors for machine learning models.
  • Utilized a gradient-boosting decision tree model for predicting transition temperatures.

Main Results:

  • The enhanced UPPER representation combined with machine learning accurately predicts experimental transition temperatures across diverse chemical spaces.
  • The method demonstrated predictive power for energetic materials, even with a limited dataset.
  • Achieved competitive results on large public datasets of melting points, including OCHEM, Enamine, Bradley, and Bergström (over 47k structures).

Conclusions:

  • The adapted UPPER representation provides an efficient and accurate framework for predicting material transition temperatures using machine learning.
  • This data-driven approach accelerates materials discovery by enabling rapid virtual screening.
  • Open-source software is available, facilitating broader adoption and further research.