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A New Screening Method for the Directed Evolution of Thermostable Bacteriolytic Enzymes
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Parallel molecular mechanisms for enzyme temperature adaptation.

Margaux M Pinney1, Daniel A Mokhtari2, Eyal Akiva3

  • 1Department of Biochemistry, Stanford University, Stanford, CA 94305, USA. margauxp@stanford.edu herschla@stanford.edu.

Science (New York, N.Y.)
|March 6, 2021
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Summary
This summary is machine-generated.

Enzyme adaptation to temperature, crucial for molecular evolution, often results from single amino acid changes. This study reveals widespread parallel evolution in bacterial enzymes, driven by specific residue modifications.

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Area of Science:

  • Molecular Evolution
  • Enzymology
  • Biophysics

Background:

  • Understanding enzyme adaptation to temperature is key to molecular evolution.
  • Enzymes must maintain activity and stability across different temperatures.
  • Evolutionary strategies for temperature adaptation are diverse.

Purpose of the Study:

  • Investigate molecular and evolutionary mechanisms of enzyme temperature adaptation.
  • Combine mechanistic studies with large-scale sequence analysis.
  • Identify key residues and evolutionary patterns in temperature adaptation.

Main Methods:

  • Deep mechanistic studies of ketosteroid isomerase (KSI).
  • Comprehensive sequence analyses of thousands of bacterial enzymes.
  • Assessment of residue properties, molecular interactions, and networks.

Main Results:

  • Temperature adaptation in KSI is driven by a single residue change with minimal epistasis.
  • This adaptation mechanism is observed across diverse KSI backgrounds, indicating parallel evolution.
  • Identified residues linked to organismal growth temperature in 1005 bacterial enzyme families, suggesting widespread parallel adaptation.

Conclusions:

  • Single residue changes are significant drivers of enzyme temperature adaptation.
  • Parallel evolution is a common strategy for bacterial enzymes adapting to temperature.
  • Specific residue properties and interactions underpin temperature adaptation.