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Updated: Nov 13, 2025

Oral Biofilm Sampling for Microbiome Analysis in Healthy Children
Published on: December 31, 2017
Dynamic Alterations of Oral Microbiota Related to Halitosis in Preschool Children
Yu Zhang1,2,3, Ce Zhu1,2,3, Guizhi Cao1,2,3
1Department of Preventive Dentistry, Shanghai Ninth People's Hospital, College of Stomatology, Shanghai Jiao Tong University School of Medicine, Shanghai, China.
Insights
Oral microbiome shifts precede halitosis in children. Specific bacteria like Prevotella melaninogenica can predict halitosis onset with high accuracy, enabling early detection.
Area of Science:
- Microbiology
- Pediatric Dentistry
- Oral Health
Background:
- Halitosis is a common concern in children, impacting social interactions.
- Understanding the dynamic changes in oral microbiota is crucial for early diagnosis.
Purpose of the Study:
- To longitudinally evaluate dynamic shifts in oral microbiota during halitosis progression in preschool children.
- To identify potential microbial biomarkers for early halitosis detection.
Main Methods:
- Longitudinal study with baseline and 12-month follow-up.
- Collection of oral examinations, questionnaires, and tongue coating specimens.
- 16S rRNA gene sequencing for tongue coating microbiome analysis.
Main Results:
- Significant differences in microbiome composition and relative abundance between halitosis and control groups, even before clinical onset.
- Distinct shifting patterns in microbiome structure and diversity observed over 12 months.
- Identification of Prevotella melaninogenica, Actinomyces sp., and Saccharibacteria TM7 as predictive biomarkers with 91.7% accuracy.
Conclusions:
- Tongue coating microbiome composition differs significantly between children who develop halitosis and healthy controls.
- Microbial shifts detected prior to halitosis onset can be used for prediction.
- This study supports timely detection and intervention of halitosis in children through microbiome analysis.
Objective:
This longitudinal study was aimed to evaluate the dynamic shift in oral microbiota during the process of halitosis progression among preschool children.
Methods:
The oral examinations, questionnaires and tongue coating specimens were collected at the baseline and 12-month follow-up. All children were oral healthy at the enrollment. At the 12-month follow-up, children who developed halitosis were included to the halitosis group (n = 10). While children who matched the age, gender, kindergarten and without halitosis were included to the control group (n = 10). 16S rRNA gene sequencing was used to reveal the shift of the tongue coating microbiome in these children during the 12- month period with the Human Oral Microbiome Database.
Results:
A remarkable shift in relative abundance of specific bacteria was observed prior to halitosis development. The principal coordinates and alpha diversity analyses revealed different shifting patterns of halitosis and the healthy participants' microbiome structures and bacterial diversity over the 12-month follow-up. Both groups showed variable microbiota community structures before the onset of halitosis. Halitosis-enriched species Prevotella melaninogenica, Actinomyces sp._HMT_180 and Saccharibacteria TM7_G-1_bacterium_HMT_352 were finally selected as biomarkers in the halitosis-onset prediction model after screening, with a prediction accuracy of 91.7%.
Conclusions:
The microbiome composition and relative abundance of the tongue coatings in the halitosis and control groups remarkably differed, even prior to the onset of the clinical manifestations of halitosis. The halitosis prediction model constructed on the basis of tongue coating microbiome biomarkers indicated the microbial shifts before the halitosis onset. Therefore, this can be considered for the timely detection and intervention of halitosis in children.
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