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Updated: Nov 12, 2025

Visualizing and Quantifying Endonuclease-Based Site-Specific DNA Damage
Published on: August 21, 2021
Lethal DNA Lesions Caused by Direct and Indirect Actions of X rays are Repaired via Different DSB Repair Pathways
Ryoichi Hirayama1, Atsushi Ito2, Akiko Uzawa1
1Departments of a Charged Particle Therapy Research, National Institutes for Quantum and Radiological Science and Technology, Chiba, Japan.
Abstract:
We examined lethal damages of X rays induced by direct and indirect actions, in terms of double-strand break (DSB) repair susceptibility using two kinds of repair-deficient Chinese hamster ovary (CHO) cell lines. These CHO mutants (51D1 and xrs6) are genetically deficient in one of the two important DNA repair pathways after genotoxic injury [homologous recombination (HR) and non-homologous end binding (NHEJ) pathways, respectively]. The contribution of indirect action on cell killing can be estimated by applying the maximum level of dimethylsulfoxide (DMSO) to get rid of OH radicals. To control the proportion of direct and indirect actions in lethal damage, we irradiated CHO mutant cells under aerobic and anoxic conditions. The contributions of indirect action on HR-defective 51D1 cells were 76% and 57% under aerobic and anoxic conditions, respectively. Interestingly, these percentages were similar to those of the wild-type cells even if the radiosensitivity was different. However, the contributions of indirect action to cell killing on NHEJ-defective xrs6 cells were 52% and 33% under aerobic and anoxic conditions, respectively. Cell killing by indirect action was significantly affected by the oxygen concentration and the DSB repair pathways but was not correlated with radiosensitivity. These results suggest that the lethal damage induced by direct action is mostly repaired by NHEJ repair pathway since killing of NHEJ-defective cells has significantly higher contribution by the direct action. In other words, the HR repair pathway may not effectively repair the DSB by direct action in place of the NHEJ repair pathway. We conclude that the type of DSB produced by direct action is different from that of DSB induced by indirect action.
Insights
X-ray induced cell damage depends on direct and indirect actions. DNA repair pathways, homologous recombination (HR) and non-homologous end joining (NHEJ), influence cell survival differently, with NHEJ primarily repairing direct action damage.
Area of Science:
- Molecular Biology
- Radiation Biology
- Genetics
Background:
- X-rays induce DNA damage through direct and indirect mechanisms.
- DNA double-strand breaks (DSBs) are critical lesions repaired by homologous recombination (HR) and non-homologous end joining (NHEJ) pathways.
- Understanding the differential roles of these repair pathways in response to direct vs. indirect radiation damage is crucial.
Purpose of the Study:
- To investigate the distinct contributions of direct and indirect X-ray actions to cell killing.
- To assess the role of homologous recombination (HR) and non-homologous end joining (NHEJ) DNA repair pathways in mitigating radiation-induced lethal damage.
- To determine how oxygen levels influence the balance between direct and indirect radiation effects on cell survival.
Main Methods:
- Utilized two Chinese hamster ovary (CHO) cell lines deficient in either HR (51D1) or NHEJ (xrs6) repair.
- Irradiated cells under aerobic and anoxic conditions to modulate indirect damage contribution.
- Employed dimethyl sulfoxide (DMSO) to scavenge hydroxyl radicals, thereby quantifying indirect action effects.
Main Results:
- Indirect action contributed significantly to cell killing in HR-defective cells (76% aerobic, 57% anoxic).
- Indirect action's contribution to cell killing in NHEJ-defective cells was lower (52% aerobic, 33% anoxic) and varied with oxygen levels.
- Cell killing by indirect action was dependent on repair pathway and oxygen, but not radiosensitivity.
Conclusions:
- The NHEJ pathway is critical for repairing DNA double-strand breaks induced by direct X-ray action.
- The HR pathway appears less effective in repairing DSBs caused by direct radiation action compared to NHEJ.
- Direct and indirect radiation actions generate distinct types of DNA double-strand breaks, differentially processed by cellular repair machinery.
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