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Improving visual communication of discriminative accuracy for predictive models: the probability threshold plot.

Stephen S Johnston1, Stephen Fortin2, Iftekhar Kalsekar1

  • 1Epidemiology, Medical Devices, Johnson & Johnson, New Brunswick, New Jersey, USA.

JAMIA Open
|March 18, 2021
PubMed
Summary
This summary is machine-generated.

The probability threshold plot (PTP) offers a clearer view of predictive model accuracy than ROC curves. This visual tool aids in better medical decision-making by showing model performance across various probability thresholds.

Keywords:
discriminative accuracypredictive analyticsreceiver operating characteristic curve

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Area of Science:

  • Machine Learning
  • Medical Informatics
  • Biostatistics

Background:

  • Predictive models are crucial in healthcare decision-making.
  • Assessing discriminative accuracy of predictive models is essential.
  • Existing methods like ROC curves may not fully capture model performance across all probability thresholds.

Purpose of the Study:

  • To introduce the probability threshold plot (PTP) as a novel visual display.
  • To transparently communicate a predictive model's discriminative accuracy.
  • To evaluate the PTP's utility in understanding model performance across predicted probability ranges.

Main Methods:

  • Replicated a validated machine learning model for predicting antihyperglycemic medication cessation.
  • Applied the probability threshold plot (PTP) to visualize model performance.
  • Compared PTP characteristics with receiver operating characteristic (ROC) curves.

Main Results:

  • Analysis included 18,887 patients.
  • Models showed similar ROC curves and Area Under the Curve (AUC) values (0.672 vs. 0.673).
  • PTPs revealed significant differences in sensitivity, specificity, positive predictive value (PPV), and negative predictive value (NPV) across probability thresholds, despite similar ROC performance.

Conclusions:

  • The PTP enhances the visual display of predictive model discriminative accuracy.
  • PTPs offer a more nuanced understanding of model performance compared to ROC curves.
  • This improved visualization can aid in the practical application of predictive models for medical decision-making.