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DNA probes are fragments of DNA labeled with a reporter tag to enable their detection or purification. The resulting labeled DNA probes can then hybridize to target nucleic acid sequences through complementary base-pairing, and may be used to recover or identify these regions.
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Updated: Nov 12, 2025

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Versatile Labeling and Detection of Endogenous Proteins Using Tag-Assisted Split Enzyme Complementation.

Suraj Makhija1, David Brown2, Rachel M Rudlaff2

  • 1UC Berkeley - UCSF Joint Graduate Program in Bioengineering, University of California, San Francisco, San Francisco, California 94143, United States.

ACS Chemical Biology
|March 18, 2021
PubMed
Summary
This summary is machine-generated.

We developed a novel tag-assisted split enzyme complementation (TASEC) method for improved analysis of endogenous proteins. This approach enhances knock-in cell enrichment, protein interaction studies, and gene editing applications.

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Area of Science:

  • Molecular Biology
  • Genomics
  • Biotechnology

Background:

  • Genome engineering allows studying proteins in natural states.
  • Small peptide tags facilitate high-throughput endogenous protein analysis.
  • Current methods have limitations in enrichment capacity and functionality.

Purpose of the Study:

  • To develop an improved method for endogenous protein analysis using short tags.
  • To enhance knock-in cell enrichment and expand functional applications.
  • To introduce the tag-assisted split enzyme complementation (TASEC) approach.

Main Methods:

  • Developed the tag-assisted split enzyme complementation (TASEC) approach.
  • Engineered and optimized the tag-assisted split HaloTag complementation system (TA-splitHalo).
  • Utilized two orthogonal small peptide tags and cognate binders for enzyme complementation.

Main Results:

  • Demonstrated improved efficiency in knock-in cell enrichment.
  • Successfully detected protein-protein interactions.
  • Enabled isolation of biallelic gene edited cells via multiplexing.

Conclusions:

  • TASEC approach significantly enhances endogenous protein studies.
  • TA-splitHalo system offers versatile applications in cell enrichment and gene editing.
  • This method provides a scalable and functional tool for molecular biology research.