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Related Concept Videos

Anatomy of the Brain: Major Regions01:20

Anatomy of the Brain: Major Regions

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The brain is the most complex organ in the human body. It consists of four main parts: the cerebrum, diencephalon, cerebellum, and brainstem.
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Anatomy of the Brain: Ventricles01:18

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There are hollow fluid-filled cavities known as ventricles deep inside the human brain. There are two lateral ventricles, one in each cerebral hemisphere, and each has three different projections — the anterior, inferior, and posterior horns visible from the lateral side. A thin membrane called the septum pellucidum separates the two lateral ventricles. The slender third ventricle in the diencephalon is connected to each lateral ventricle via a channel called the interventricular foramen.
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Brain Imaging01:14

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Brain imaging technologies provide critical insights into both the structure and function of the human brain, enabling medical professionals and researchers to diagnose, study, and treat neurological disorders or psychiatric disorders more effectively.
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Cerebrum: Anatomical Overview II01:11

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Each cerebral hemisphere can be divided into three main regions. The outermost region, the cerebral cortex, is a thin layer (2 to 4 millimeters thick) made up of gray matter, consisting of neuron cell bodies, dendrites, glial cells, and blood vessels. The middle region, or white matter, is primarily composed of myelinated nerve fibers organized into three types of large tracts: association fibers, commissures, and projection fibers. Association fibers connect different areas within the same...
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Related Experiment Video

Updated: Nov 12, 2025

Whole-brain Segmentation and Change-point Analysis of Anatomical Brain MRI—Application in Premanifest Huntington's Disease
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Visualizing anatomically registered data with brainrender.

Federico Claudi1, Adam L Tyson1, Luigi Petrucco2,3

  • 1UCL Sainsbury Wellcome Centre, London, United Kingdom.

Elife
|March 19, 2021
PubMed
Summary
This summary is machine-generated.

Brainrender is a new Python package for visualizing complex brain data. It allows researchers to create interactive 3D renderings from diverse, anatomically registered datasets, accelerating scientific discovery.

Keywords:
anatomydata visualizationneurosciencenoneopen sourcesoftware

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Area of Science:

  • Neuroscience
  • Bioinformatics
  • Scientific Visualization

Background:

  • High-throughput brain imaging and 3D digital brain atlases generate large, multidimensional datasets.
  • Analyzing these datasets requires effective visualization and interactive exploration, which is currently challenging.
  • Existing software is limited to specific atlases, species, or data types, hindering integrated analysis.

Purpose of the Study:

  • To present brainrender, an open-source Python package for interactive visualization of multidimensional brain data.
  • To enable the creation of complex 3D renderings integrating diverse, anatomically registered data sources.
  • To facilitate the analysis, interpretation, and dissemination of brain-wide data.

Main Methods:

  • Developed brainrender as an open-source Python package.
  • Implemented functionality for interactive visualization of multidimensional datasets registered to brain atlases.
  • Enabled seamless integration of different atlas sources and data types within a single visualization.

Main Results:

  • Brainrender facilitates the creation of complex 3D renderings with multiple data types.
  • The package supports the use of different brain atlas sources.
  • Visualizations can be used interactively and exported as high-resolution figures and animated videos.

Conclusions:

  • Brainrender simplifies the visualization of anatomically registered brain data.
  • The tool accelerates the analysis and interpretation of large-scale neuroscience datasets.
  • Brainrender promotes wider dissemination of brain-wide multidimensional data.