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RNA Pull-down Procedure to Identify RNA Targets of a Long Non-coding RNA
Published on: April 10, 2018
Long noncoding RNA HBBP1 enhances γ-globin expression through the ETS transcription factor ELK1
Shuang-Ping Ma1, Hai-Rui Xi1, Xu-Xia Gao1
1State Key Laboratory of Genetic Engineering, School of Life Sciences, Fudan University, Shanghai, 200438, China.
Hemoglobin subunit beta pseudogene 1 (HBBP1) reactivates fetal hemoglobin (HbF) production in beta-thalassemia by enhancing the expression of transcription factor ELK1, which also directly boosts gamma-globin synthesis.
Area of Science:
- Genetics
- Molecular Biology
- Hematology
Background:
- Beta-thalassemia, a genetic blood disorder, results from defective adult hemoglobin (HbA) production.
- Reactivating fetal hemoglobin (HbF) is a therapeutic strategy for beta-thalassemia.
- Hemoglobin subunit beta pseudogene 1 (HBBP1) is linked to increased HbF, but its mechanism is unclear.
Purpose of the Study:
- To elucidate the mechanism by which HBBP1 influences gamma-globin expression.
- To investigate the role of HBBP1 and ELK1 in regulating HbF production.
Main Methods:
- Bioinformatics analysis to identify HBBP1's role in gamma-globin production.
- Gene overexpression studies in K562 and HUDEP-2 cells.
- Analysis of HBBP1 and ELK1 interactions and promoter activities.
Main Results:
- HBBP1 overexpression increased gamma-globin at transcript and protein levels.
- ELK1 transcription factor binds to and activates the HBBP1 promoter.
- ELK1 overexpression enhanced gamma-globin synthesis and directly activated its promoter.
- HBBP1 and ELK1 were found to interact in cells.
Conclusions:
- HBBP1 induces gamma-globin expression, at least partly, by enhancing ELK1 expression.
- This pathway provides potential targets for reactivating gamma-globin in beta-thalassemia treatment.
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