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A Method for Measuring RNA N6-methyladenosine Modifications in Cells and Tissues
Published on: December 5, 2016
N6 -Methyladenosine (m6 A) readers are dysregulated in renal cell carcinoma
Felix von Hagen1, Larissa Gundert1, Alexander Strick1
1Klinik und Poliklinik für Urologie und Kinderurologie, Universitätsklinikum Bonn, Bonn, Germany.
Abstract:
N6 -Methyladenosine (m6 A) is the most common modification of messenger RNA (mRNA) in mammals. It critically influences RNA metabolism and plays an essential role in virtually all types of bioprocesses including gene expression, tissue development, self-renewal and differentiation of stem cells, stress response and circadian clock control. It plays a crucial role in carcinogenesis and could be used as a prognostic and a diagnostic tool and as a target for new anticancer therapies. m6 A modification is dynamically and reversibly regulated by three types of proteins. Methyltransferases, so-called "writers" add a methyl group to the adenosine, which can be removed by demethylases, also called "erasers." m6 A-specific RNA-binding proteins, from here on referred to as "readers," preferentially bind to the m6 A site and mediate biological functions, such as translation, splicing or decay of RNA. In this study, we examined the expression of the six m6 A readers HNRNPA2B1, HNRNPC, YTHDC1 and YTHDF1-3 in clear cell renal carcinoma (ccRCC). We show that on mRNA level the expression of all six m6 A readers is significantly downregulated compared to normal renal tissue and on protein level five out of six readers are dysregulated. Lower levels of some m6 A readers are correlated with advanced stage and grade as well as associated with a shorter overall, progression-free and cancer-specific survival. In summary, we could show that m6 A readers are dysregulated in ccRCC and might therefore act as a tumor marker, could give further information on the individual prognosis and be a target of innovative cancer therapy.
Insights
N6-Methyladenosine (m6A) readers are downregulated in clear cell renal cell carcinoma (ccRCC), impacting patient survival. These m6A readers may serve as diagnostic markers and therapeutic targets for ccRCC.
Area of Science:
- Molecular Biology
- Oncology
- Epigenetics
Background:
- N6-Methyladenosine (m6A) is the most prevalent mRNA modification in mammals, regulating crucial cellular processes.
- m6A modification influences gene expression, cell development, and cancer progression.
- m6A regulators include 'writers,' 'erasers,' and 'readers' that bind m6A sites to mediate downstream functions.
Purpose of the Study:
- To investigate the expression of six key m6A readers (HNRNPA2B1, HNRNPC, YTHDC1, YTHDF1-3) in clear cell renal cell carcinoma (ccRCC).
- To correlate the expression levels of these readers with clinical parameters and patient survival in ccRCC.
Main Methods:
- Quantitative analysis of mRNA and protein expression of six m6A readers in ccRCC tissues versus normal renal tissues.
- Statistical correlation analysis between reader expression levels and ccRCC stage, grade, and patient survival outcomes.
Main Results:
- All six m6A readers showed significantly downregulated mRNA expression in ccRCC compared to normal tissue.
- Five out of six readers exhibited dysregulated protein expression in ccRCC.
- Lower expression of certain m6A readers correlated with advanced ccRCC stage and grade.
- Reduced levels of some m6A readers were associated with shorter overall, progression-free, and cancer-specific survival.
Conclusions:
- m6A readers are significantly dysregulated in ccRCC, indicating their potential role in tumorigenesis.
- These dysregulated m6A readers may serve as valuable prognostic biomarkers for ccRCC.
- Targeting m6A readers could represent a novel therapeutic strategy for ccRCC treatment.
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