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Bacterial Protein Maturation01:26

Bacterial Protein Maturation

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Bacterial protein maturation is a tightly regulated process that ensures newly synthesized polypeptides achieve correct functional conformations. This maturation involves a series of modifications, folding events, and quality control steps, often assisted by specialized chaperone proteins.N-Terminal ModificationsThe maturation of bacterial polypeptides begins cotranslationally as the polypeptide exits the ribosome. The first amino acid, N-formylmethionine (fMet), is typically modified at the...
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Thermosensation01:43

Thermosensation

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Peripheral thermosensation is the perception of external temperature. A change in temperature (on the surface of the skin and other tissues) is detected by a family of temperature-sensitive ion channels called Transient Receptor Potential, or TRP, receptors. These receptors are located on free nerve endings. Those detecting cold temperatures are closer to the surface of the skin than the nerve endings detecting warmth. These thermoTRP channels, while temperature selective, have relatively...
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Energy to Drive Translocation01:37

Energy to Drive Translocation

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Mitochondrial protein import is powered by two distinct energy sources: ATP hydrolysis and electrochemical potential across the inner membrane. Newly synthesized precursors are bound by cytosolic chaperones of the Hsp70 family, which guide them to the import receptors on the mitochondrial surface. Utilizing the energy of ATP hydrolysis, Hsp70 chaperones transfer these precursors to the TOM receptors on the mitochondrial outer membrane.
Generally, polypeptides are unfolded by two distinct...
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tRNA Activation02:26

tRNA Activation

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Aminoacyl-tRNA synthetases are present in both eukaryotes and bacteria. Though eukaryotes have 20 different aminoacyl-tRNA synthetases to couple to 20 amino acids, many bacteria do not have genes for all of these aminoacyl-tRNA synthetases. Despite this, they still use all 20 amino acids to synthesize their proteins. For instance, some bacteria do not have the gene encoding the enzyme that couples glutamine with its partner tRNA. In these organisms, one enzyme adds glutamic acid to all of the...
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Translational Regulation01:29

Translational Regulation

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Translational regulation in prokaryotes ensures efficient protein synthesis by controlling ribosome access to mRNA. This regulation is mediated by secondary RNA structures, including translational riboswitches, RNA thermometers, and small RNAs (sRNAs), which respond to intracellular and environmental signals to modulate gene expression.Translational RiboswitchesRiboswitches in the leader region of mRNAs can regulate translation by altering the accessibility of the Shine-Dalgarno (SD) sequence,...
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Molecular Chaperones and Protein Folding03:00

Molecular Chaperones and Protein Folding

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The native conformation of a protein is formed by interactions between the side chains of its constituent amino acids. When the amino acids cannot form these interactions, the protein cannot fold by itself and needs chaperones. Notably, chaperones do not relay any additional information required for the folding of polypeptides; the native conformation of a protein is determined solely by its amino acid sequence. Chaperones catalyze protein folding without being a part of the folded protein.
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Related Experiment Video

Updated: Nov 11, 2025

Sequence-specific and Selective Recognition of Double-stranded RNAs over Single-stranded RNAs by Chemically Modified Peptide Nucleic Acids
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Sequence-specific and Selective Recognition of Double-stranded RNAs over Single-stranded RNAs by Chemically Modified Peptide Nucleic Acids

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Temperature-Responsive Peptide-Nucleotide Coacervates.

Tiemei Lu1, Karina K Nakashima1, Evan Spruijt1

  • 1Radboud University, Institute for Molecules and Materials, Heyendaalseweg 135, 6525 AJ Nijmegen, The Netherlands.

The Journal of Physical Chemistry. B
|March 24, 2021
PubMed
Summary
This summary is machine-generated.

Peptide-nucleotide coacervates show temperature sensitivity due to base stacking. Mixing different nucleoside triphosphates (NTPs) alters condensate stability and bioavailability, offering insights into membraneless organelles.

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Area of Science:

  • Biophysics
  • Chemical Biology
  • Materials Science

Background:

  • Coacervates are liquid-liquid phase separated droplets modeling cellular membraneless organelles.
  • Peptide-nucleotide coacervates mimic ribonucleoprotein granules but their thermal stability and base stacking roles are unclear.

Purpose of the Study:

  • Systematically investigate the thermal stability of coacervates formed by five nucleoside triphosphates (NTPs) with poly-l-lysine and poly-l-arginine.
  • Elucidate the role of base stacking and nonelectrostatic interactions in coacervate phase behavior.
  • Explore the properties of hybrid coacervates formed by mixing different NTPs.

Main Methods:

  • Formation and characterization of coacervates using five different NTPs and charged peptides (poly-l-lysine, poly-l-arginine).
  • Temperature-dependent phase behavior analysis, including upper critical solution temperature (UCST) and critical salt concentration determination.
  • Dye partitioning experiments to assess internal hydrophobicity.
  • Mean-field modeling to relate critical point parameters.

Main Results:

  • All NTP-peptide coacervates exhibited UCST and temperature-dependent critical salt concentration, indicating significant nonelectrostatic contributions.
  • Nonelectrostatic interactions decreased in the order G/A/U/C/T, correlating with base stacking energies.
  • Local hydrophobicity within coacervates varied depending on the specific NTP.
  • Hybrid coacervates displayed intermediate UCST and critical salt concentrations, with lower-concentration NTPs stabilizing mixed condensates.

Conclusions:

  • NTP-based coacervates exhibit significant temperature sensitivity driven by base stacking interactions.
  • Mixing different NTPs provides a tunable mechanism to control coacervate stability and bioavailability.
  • These findings offer valuable insights into the behavior of membraneless organelles and RNP granules.