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Updated: Nov 11, 2025

Analysis of Termination of Transcription Using BrUTP-strand-specific Transcription Run-on TRO Approach
Published on: March 12, 2017
Effect of small molecule eRF3 degraders on premature termination codon readthrough
Alireza Baradaran-Heravi1, Aruna D Balgi1, Sara Hosseini-Farahabadi1
1Department of Biochemistry and Molecular Biology, University of British Columbia, Vancouver, BC V6T 1Z3, Canada.
Abstract:
Premature termination codon (PTC) readthrough is considered a potential treatment for genetic diseases caused by nonsense mutations. High concentrations of aminoglycosides induce low levels of PTC readthrough but also elicit severe toxicity. Identifying compounds that enhance PTC readthrough by aminoglycosides or reduce their toxicity is a continuing challenge. In humans, a binary complex of eukaryotic release factors 1 (eRF1) and 3 (eRF3a or eRF3b) mediates translation termination. They also participate in the SURF (SMG1-UPF1-eRF1-eRF3) complex assembly involved in nonsense-mediated mRNA decay (NMD). We show that PTC readthrough by aminoglycoside G418 is considerably enhanced by eRF3a and eRF3b siRNAs and cereblon E3 ligase modulators CC-885 and CC-90009, which induce proteasomal degradation of eRF3a and eRF3b. eRF3 degradation also reduces eRF1 levels and upregulates UPF1 and selectively stabilizes TP53 transcripts bearing a nonsense mutation over WT, indicating NMD suppression. CC-90009 is considerably less toxic than CC-885 and it enhances PTC readthrough in combination with aminoglycosides in mucopolysaccharidosis type I-Hurler, late infantile neuronal ceroid lipofuscinosis, Duchenne muscular dystrophy and junctional epidermolysis bullosa patient-derived cells with nonsense mutations in the IDUA, TPP1, DMD and COL17A1 genes, respectively. Combination of CC-90009 with aminoglycosides such as gentamicin or ELX-02 may have potential for PTC readthrough therapy.
Insights
New compounds enhance premature termination codon (PTC) readthrough for genetic diseases. CC-90009, a cereblon modulator, works with aminoglycosides to boost readthrough and reduce toxicity, offering potential therapeutic strategies.
Area of Science:
- Molecular Biology
- Genetics
- Pharmacology
Background:
- Premature termination codon (PTC) readthrough is a therapeutic strategy for genetic diseases caused by nonsense mutations.
- Aminoglycosides induce PTC readthrough but cause significant toxicity.
- Developing compounds to enhance PTC readthrough or reduce aminoglycoside toxicity is crucial.
Purpose of the Study:
- To identify compounds that enhance aminoglycoside-induced PTC readthrough.
- To investigate the role of eukaryotic release factors (eRFs) in PTC readthrough and nonsense-mediated mRNA decay (NMD).
- To evaluate the therapeutic potential of novel compounds in patient-derived cells.
Main Methods:
- Utilized small interfering RNAs (siRNAs) targeting eRF3a and eRF3b.
- Tested cereblon E3 ligase modulators (CC-885, CC-90009) for their effect on eRF3 degradation and PTC readthrough.
- Assessed NMD pathway modulation and compound toxicity in patient-derived cell lines with specific nonsense mutations.
Main Results:
- siRNAs against eRF3a/eRF3b and modulators CC-885/CC-90009 enhanced G418-induced PTC readthrough by degrading eRF3.
- eRF3 degradation suppressed NMD and selectively stabilized nonsense-mutated transcripts.
- CC-90009 demonstrated lower toxicity than CC-885 and enhanced PTC readthrough with aminoglycosides in multiple disease models.
Conclusions:
- Degradation of eRF3a/eRF3b enhances PTC readthrough and suppresses NMD.
- CC-90009 is a promising candidate for PTC readthrough therapy due to its efficacy and reduced toxicity.
- Combination therapy with CC-90009 and aminoglycosides (e.g., gentamicin, ELX-02) holds potential for treating genetic diseases caused by nonsense mutations.
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