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Published on: December 21, 2019
Designed β-Hairpins Inhibit LDH5 Oligomerization and Enzymatic Activity
Ferran Nadal-Bufi1, Jody M Mason2, Lai Yue Chan3
1School of Biomedical Sciences, Translational Research Institute, Queensland University of Technology, Brisbane, Queensland 4102, Australia.
Abstract:
Lactate dehydrogenase 5 (LDH5) is overexpressed in metastatic tumors and is an attractive target for anticancer therapy. Small-molecule drugs have been developed to target the substrate/cofactor sites of LDH5, but none has reached the clinic to date, and alternative strategies remain almost unexplored. Combining rational and computer-based approaches, we identified peptidic sequences with high affinity toward a β-sheet region that is involved in protein-protein interactions (PPIs) required for the activity of LDH5. To improve stability and potency, these sequences were grafted into a cyclic cell-penetrating β-hairpin peptide scaffold. The lead grafted peptide, cGmC9, inhibited LDH5 activity in vitro in low micromolar range and more efficiently than the small-molecule inhibitor GNE-140. cGmC9 inhibits LDH5 by targeting an interface unlikely to be inhibited by small-molecule drugs. This lead will guide the development of new LDH5 inhibitors and challenges the landscape of drug discovery programs exclusively dedicated to small molecules.
Insights
Researchers developed a novel peptide inhibitor, cGmC9, targeting Lactate dehydrogenase 5 (LDH5) in metastatic tumors. This peptide offers a new strategy for anticancer therapy by inhibiting LDH5 activity more effectively than small-molecule drugs.
Area of Science:
- Biochemistry
- Oncology
- Drug Discovery
Background:
- Lactate dehydrogenase 5 (LDH5) is overexpressed in metastatic tumors, making it a potential therapeutic target.
- Current small-molecule inhibitors targeting LDH5 have not reached clinical application, necessitating alternative strategies.
Purpose of the Study:
- To identify and develop novel peptide-based inhibitors targeting LDH5.
- To explore alternative drug discovery approaches beyond small molecules for LDH5 inhibition.
Main Methods:
- Utilized rational and computer-based approaches to identify high-affinity peptidic sequences targeting LDH5.
- Grafted identified sequences into a cyclic cell-penetrating β-hairpin peptide scaffold to enhance stability and potency.
- Assessed the inhibitory activity of the lead peptide, cGmC9, against LDH5 in vitro.
Main Results:
- Identified peptidic sequences targeting a β-sheet region crucial for LDH5 protein-protein interactions.
- The lead peptide, cGmC9, demonstrated low micromolar inhibition of LDH5 activity in vitro.
- cGmC9 exhibited superior inhibition compared to the small-molecule inhibitor GNE-140, targeting a novel interface.
Conclusions:
- Peptide-based inhibitors like cGmC9 represent a promising alternative to small molecules for targeting LDH5.
- cGmC9's unique inhibition mechanism provides a new avenue for developing anticancer therapies.
- This study challenges the exclusive focus on small molecules in LDH5 drug discovery programs.
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