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Updated: Nov 11, 2025

A Fast and Reliable Pipeline for Bacterial Transcriptome Analysis Case study: Serine-dependent Gene Regulation in Streptococcus pneumoniae
Published on: April 25, 2015
A molecular link between cell wall biosynthesis, translation fidelity, and stringent response in Streptococcus
Surya D Aggarwal1, Adrian J Lloyd2, Saigopalakrishna S Yerneni3
1Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA 15213.
Abstract:
Survival in the human host requires bacteria to respond to unfavorable conditions. In the important Gram-positive pathogen Streptococcus pneumoniae, cell wall biosynthesis proteins MurM and MurN are tRNA-dependent amino acyl transferases which lead to the production of branched muropeptides. We demonstrate that wild-type cells experience optimal growth under mildly acidic stressed conditions, but ΔmurMN strain displays growth arrest and extensive lysis. Furthermore, these stress conditions compromise the efficiency with which alanyl-tRNAAla synthetase can avoid noncognate mischarging of tRNAAla with serine, which is toxic to cells. The observed growth defects are rescued by inhibition of the stringent response pathway or by overexpression of the editing domain of alanyl-tRNAAla synthetase that enables detoxification of tRNA misacylation. Furthermore, MurM can incorporate seryl groups from mischarged Seryl-tRNAAlaUGC into cell wall precursors with exquisite specificity. We conclude that MurM contributes to the fidelity of translation control and modulates the stress response by decreasing the pool of mischarged tRNAs. Finally, we show that enhanced lysis of ΔmurMN pneumococci is caused by LytA, and the murMN operon influences macrophage phagocytosis in a LytA-dependent manner. Thus, MurMN attenuates stress responses with consequences for host-pathogen interactions. Our data suggest a causal link between misaminoacylated tRNA accumulation and activation of the stringent response. In order to prevent potential corruption of translation, consumption of seryl-tRNAAla by MurM may represent a first line of defense. When this mechanism is overwhelmed or absent (ΔmurMN), the stringent response shuts down translation to avoid toxic generation of mistranslated/misfolded proteins.
Insights
Streptococcus pneumoniae's MurM protein prevents toxic translation errors during stress by incorporating mischarged seryl-tRNAAla. Deletion of MurMN causes growth arrest and lysis, highlighting MurMN's role in bacterial stress response and host interactions.
Area of Science:
- Microbiology
- Bacterial Pathogenesis
- Molecular Biology
Background:
- Bacterial survival hinges on responding to environmental stressors.
- Streptococcus pneumoniae relies on cell wall biosynthesis proteins MurM and MurN for branched muropeptide production.
- Acidic stress impacts tRNA synthetase fidelity, leading to toxic mischarging.
Purpose of the Study:
- To investigate the role of MurM and MurN in Streptococcus pneumoniae's response to acidic stress.
- To elucidate the mechanism by which MurMN influences bacterial growth, lysis, and host-pathogen interactions.
- To explore the link between mischarged tRNAs, stringent response, and MurM function.
Main Methods:
- Comparative growth analysis of wild-type and ΔmurMN strains under acidic conditions.
- Assessment of alanyl-tRNAAla synthetase efficiency and tRNA misacylation.
- Genetic manipulation including gene deletion and overexpression.
- Investigation of LytA's role in lysis and macrophage phagocytosis.
Main Results:
- Wild-type S. pneumoniae thrives in mild acidic stress, while ΔmurMN exhibits growth arrest and lysis.
- Acidic stress reduces alanyl-tRNAAla synthetase fidelity, increasing toxic seryl-tRNAAla mischarging.
- MurM specifically incorporates seryl groups from mischarged tRNAAla into cell wall precursors.
- Inhibition of stringent response or overexpression of tRNA synthetase editing domain rescues growth defects.
- Enhanced lysis in ΔmurMN is LytA-dependent, impacting macrophage phagocytosis.
Conclusions:
- MurM contributes to translational fidelity and stress response modulation by reducing mischarged tRNAs.
- Mischarged tRNA accumulation triggers the stringent response, halting translation to prevent protein misfolding.
- MurMN attenuates stress responses, influencing host-pathogen interactions.
- MurM acts as a first line of defense against translation errors, with MurMN deletion leading to severe stress responses.
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