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Updated: Nov 10, 2025

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A transformation-free linear regression for compositional outcomes and predictors.

Jacob Fiksel1, Scott Zeger1, Abhirup Datta1

  • 1Department of Biostatistics, Johns Hopkins University, Baltimore, Maryland, USA.

Biometrics
|March 31, 2021
PubMed
Summary
This summary is machine-generated.

This study introduces a new, easy-to-interpret linear regression model for compositional data. The transformation-free approach handles complex relationships and allows for zeros and ones, improving analysis in various scientific fields.

Keywords:
Kullback-Leibler distance loss functioncompositional dataestimating equationexpectation-maximization algorithmtransformation-free

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Area of Science:

  • Statistics
  • Data Science
  • Biostatistics

Background:

  • Compositional data, representing parts of a whole, are prevalent across scientific disciplines.
  • Existing models for compositional data often rely on complex transformations, hindering interpretation.
  • A need exists for simpler, more interpretable models for compositional regression analysis.

Purpose of the Study:

  • To develop a novel, transformation-free linear regression model for compositional outcome and predictor variables.
  • To provide a model that is interpretable in the compositional space and robust to various data-generating mechanisms.
  • To enable the analysis of compositional data, including those with zero or one values.

Main Methods:

  • Developed a linear regression model based on estimating equations, avoiding complex log-ratio transformations.
  • The model expresses the compositional outcome as a Markov transition from the compositional predictor.
  • Introduced permutation tests for assessing linear independence and equality of effect sizes.

Main Results:

  • The proposed model offers a simple interpretation of relationships between compositional variables.
  • It effectively handles compositional data containing zeros and ones in both outcomes and covariates.
  • The model demonstrated accurate capture of compositional data relationships in education and medical research datasets.

Conclusions:

  • The transformation-free linear regression model provides a significant advancement for analyzing compositional data.
  • Its interpretability and robustness make it a valuable tool for researchers in diverse fields.
  • The model facilitates a more accessible and accurate understanding of compositional data structures.