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Updated: Nov 10, 2025

Real-time Electrophysiology: Using Closed-loop Protocols to Probe Neuronal Dynamics and Beyond
Published on: June 24, 2015
Collective behavior in a two-layer neuronal network with time-varying chemical connections that are controlled by a
Alireza Bahramian1, Fatemeh Parastesh1, Viet-Thanh Pham2
1Department of Biomedical Engineering, Amirkabir University of Technology, No. 350, Hafez Ave., Valiasr Square, Tehran 159163-4311, Iran.
Abstract:
In this paper, we propose and study a two-layer network composed of a Petri net in the first layer and a ring of coupled Hindmarsh-Rose neurons in the second layer. Petri nets are appropriate platforms not only for describing sequential processes but also for modeling information circulation in complex systems. Networks of neurons, on the other hand, are commonly used to study synchronization and other forms of collective behavior. Thus, merging both frameworks into a single model promises fascinating new insights into neuronal collective behavior that is subject to changes in network connectivity. In our case, the Petri net in the first layer manages the existence of excitatory and inhibitory links among the neurons in the second layer, thereby making the chemical connections time-varying. We focus on the emergence of different types of collective behavior in the model, such as synchronization, chimeras, and solitary states, by considering different inhibitory and excitatory tokens in the Petri net. We find that the existence of only inhibitory or excitatory tokens disturbs the synchronization of electrically coupled neurons and leads toward chimera and solitary states.
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