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Large-Scale SARS-CoV-2 Testing Utilizing Saliva and Transposition Sample Pooling
Published on: June 23, 2022
Identifying COVID-19 cases in outpatient settings
Yinan Mao1,2, Yi-Roe Tan3, Tun Linn Thein3
1Saw Swee Hock School of Public Health, National University of Singapore and National University Health System, Singapore, Singapore.
Identifying COVID-19 patients early is crucial. This study developed a tool using symptom profiles and illness day to accurately classify patients, aiding outpatient care decisions and complementing lab testing.
Area of Science:
- Infectious Diseases
- Epidemiology
- Medical Diagnostics
Background:
- Accurate case identification for COVID-19 is challenging, especially in outpatient settings.
- Prioritizing patients for testing requires effective tools to distinguish COVID-19 from other acute respiratory illnesses.
- Symptom presentation and its evolution over time are key factors in diagnosing infectious diseases.
Purpose of the Study:
- To develop and validate a predictive tool for classifying COVID-19 patients based on symptom profiles and illness day.
- To provide a framework that complements laboratory testing in outpatient COVID-19 diagnosis.
- To assess the accuracy and performance of a symptom-based classification model.
Main Methods:
- Utilized generalized multivariate logistic regression on data from 236 SARS-CoV-2 positive cases and 564 controls.
- Analyzed symptom profiles and their significance in relation to the day of illness.
- Employed leave-one-out cross-validation and receiver operating characteristic (ROC) curve analysis for model evaluation.
Main Results:
- Significant symptoms included abdominal pain, cough, diarrhea, fever, headache, muscle ache, runny nose, and sore throat, varying in importance by illness day.
- The baseline model achieved a sensitivity of 0.67 at a specificity threshold of 0.95.
- Leave-one-out cross-validation yielded a high area under the ROC curve of 0.92, indicating strong predictive performance.
Conclusions:
- A tool utilizing symptom profiles and illness day demonstrates good predictive performance for differentiating COVID-19 patients from controls.
- This symptom-based approach can serve as a valuable framework to support clinical decision-making and laboratory testing in outpatient care.
- The model's accuracy was confirmed through external validation, suggesting its potential utility in real-world scenarios.
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