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Updated: Nov 10, 2025

Genotyping of Staphylococcus aureus by Ribosomal Spacer PCR RS-PCR
Published on: November 4, 2016
Evolution and genomic insight into methicillin-resistant Staphylococcus aureus ST9 in China
Nansong Jiang1, Kelly L Wyres2, Jun Li1,3
1Beijing Key Laboratory of Detection Technology for Animal Food Safety, College of Veterinary Medicine, China Agricultural University, Beijing, China.
Staphylococcus aureus ST9 in China evolved rapidly from pig farming origins around 1987. This strain, a reservoir for antimicrobial resistance genes, poses a potential public health risk due to host exchange between pigs and humans.
Area of Science:
- Microbiology
- Genomics
- Epidemiology
Background:
- Staphylococcus aureus sequence type 9 (ST9) is a significant pathogen with a complex evolutionary history.
- Understanding the genomic epidemiology of ST9 is crucial for public health, particularly regarding antimicrobial resistance.
Purpose of the Study:
- To reconstruct the evolutionary history and genomic epidemiology of Staphylococcus aureus ST9 in China.
- To investigate the genetic makeup, including multiresistance gene clusters and prophages, of ST9 isolates.
Main Methods:
- Whole-genome sequencing (WGS) analysis of 131 S. aureus ST9 isolates collected from China between 2002 and 2016.
- Phylogenetic analysis using Bayesian methods to determine evolutionary divergence.
- Investigation of the lsa(E)-carrying multiresistance gene cluster and prophage genotyping.
Main Results:
- ST9 isolates were divided into two clades, with Bayesian phylogeny suggesting divergence in Chinese pig farming as early as 1987.
- Isolates exhibited similar multiresistance properties, likely acquired before ST9 emergence in China.
- The accessory genome was conserved, with similar phage content but a lack of certain virulence genes.
Conclusions:
- Host exchange and transmission of ST9 between pigs and humans have occurred, potentially facilitated by pig farming and trading.
- Antimicrobial resistance in ST9 is linked to extensive antimicrobial use in livestock and stable integration of resistance genes.
- ST9 isolates represent a potential public health risk due to their role as a reservoir for antimicrobial resistance genes.
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