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Related Concept Videos

Interpreting R Charts01:22

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R chart, or range chart, is a fundamental tool in statistical process control used to monitor the variability within a process. It complements the X-bar (x̄) chart by focusing on the range of the data, rather than individual values, providing a clear picture of the process dispersion over time.
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Global and Current Research Trends of Single-Cell Sequencing in Cancer: A Bibliometric and Visualization Study
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interacCircos: an R package based on JavaScript libraries for the generation of interactive circos plots.

Zhe Cui1, Ya Cui2, Tianyi Zang1

  • 1Center for Bioinformatics, School of Computer Science and Technology, Harbin Institute of Technology, Harbin, Heilongjiang 150001, China.

Bioinformatics (Oxford, England)
|April 8, 2021
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Summary
This summary is machine-generated.

InteracCircos is a new R package that simplifies the creation of interactive Circos plots for genomic data visualization. It integrates JavaScript libraries, overcoming limitations of existing tools for R users.

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Area of Science:

  • Bioinformatics
  • Computational Biology
  • Genomic Data Visualization

Background:

  • JavaScript libraries are common for interactive Circos plots.
  • Existing libraries often require complex local installations or extensive data preprocessing.
  • Integration with R packages is limited, hindering data analysis workflows.

Purpose of the Study:

  • To introduce interacCircos, an R package for generating interactive Circos plots.
  • To provide a flexible and user-friendly tool for visualizing large-scale genomic data.
  • To bridge the gap between JavaScript visualization tools and R-based bioinformatics analysis.

Main Methods:

  • Developed interacCircos as an R package.
  • Integrated existing JavaScript-based Circos libraries.
  • Implemented 14 track-plot functions and 7 auxiliary functions.

Main Results:

  • interacCircos offers a simplified approach to creating interactive Circos plots.
  • The package flexibly supports 14 track-plot and 7 auxiliary functions.
  • Facilitates the presentation of large-scale genomic data within R environments.

Conclusions:

  • interacCircos enhances the utility and integration of interactive Circos plots in R.
  • It overcomes limitations of previous JavaScript libraries for R users.
  • Provides a powerful tool for interactive genomic data exploration.